Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11150

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11145 and ABID97_RS11150 are separated by 5 nucleotidesABID97_RS11150 and ABID97_RS11155 are separated by 74 nucleotidesABID97_RS11155 and ABID97_RS11160 are separated by 26 nucleotidesABID97_RS11160 and ABID97_RS11165 are separated by 193 nucleotides ABID97_RS11145: ABID97_RS11145 - phenylalanine--tRNA ligase subunit beta, at 2,305,170 to 2,307,611 _RS11145 ABID97_RS11150: ABID97_RS11150 - integration host factor subunit alpha, at 2,307,617 to 2,307,988 _RS11150 ABID97_RS11155: ABID97_RS11155 - MerR family transcriptional regulator, at 2,308,063 to 2,308,530 _RS11155 ABID97_RS11160: ABID97_RS11160 - tRNA-Pro, at 2,308,557 to 2,308,633 _RS11160 ABID97_RS11165: ABID97_RS11165 - integrase arm-type DNA-binding domain-containing protein, at 2,308,827 to 2,310,077 _RS11165 Position (kb) 2307 2308Strain fitness (log2 ratio) -1 0 1at 2307.986 kb on + strandat 2308.012 kb on + strandat 2308.013 kb on - strandat 2308.013 kb on - strandat 2308.017 kb on + strandat 2308.017 kb on + strandat 2308.062 kb on - strandat 2308.062 kb on - strandat 2308.754 kb on - strandat 2308.765 kb on + strandat 2308.765 kb on + strandat 2308.766 kb on - strandat 2308.766 kb on - strandat 2308.801 kb on + strandat 2308.801 kb on + strandat 2308.821 kb on + strandat 2308.822 kb on - strandat 2308.822 kb on - strandat 2308.822 kb on - strandat 2308.891 kb on - strandat 2308.891 kb on - strandat 2308.911 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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2,307,986 + -0.7
2,308,012 + +0.0
2,308,013 - +0.7
2,308,013 - +0.6
2,308,017 + -0.0
2,308,017 + -0.4
2,308,062 - +0.4
2,308,062 - +0.9
2,308,754 - +0.1
2,308,765 + +0.1
2,308,765 + +0.8
2,308,766 - -0.1
2,308,766 - -1.1
2,308,801 + -0.3
2,308,801 + +1.2
2,308,821 + +0.1
2,308,822 - -0.1
2,308,822 - +0.3
2,308,822 - +0.2
2,308,891 - -0.2
2,308,891 - -0.2
2,308,911 + +0.2

Or see this region's nucleotide sequence