Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11145 and ABID97_RS11150 are separated by 5 nucleotides ABID97_RS11150 and ABID97_RS11155 are separated by 74 nucleotides ABID97_RS11155 and ABID97_RS11160 are separated by 26 nucleotides ABID97_RS11160 and ABID97_RS11165 are separated by 193 nucleotides
ABID97_RS11145: ABID97_RS11145 - phenylalanine--tRNA ligase subunit beta, at 2,305,170 to 2,307,611
_RS11145
ABID97_RS11150: ABID97_RS11150 - integration host factor subunit alpha, at 2,307,617 to 2,307,988
_RS11150
ABID97_RS11155: ABID97_RS11155 - MerR family transcriptional regulator, at 2,308,063 to 2,308,530
_RS11155
ABID97_RS11160: ABID97_RS11160 - tRNA-Pro, at 2,308,557 to 2,308,633
_RS11160
ABID97_RS11165: ABID97_RS11165 - integrase arm-type DNA-binding domain-containing protein, at 2,308,827 to 2,310,077
_RS11165
Position (kb)
2307
2308 Strain fitness (log2 ratio)
-1
0
1 at 2307.986 kb on + strand at 2308.012 kb on + strand at 2308.013 kb on - strand at 2308.013 kb on - strand at 2308.017 kb on + strand at 2308.017 kb on + strand at 2308.062 kb on - strand at 2308.062 kb on - strand at 2308.754 kb on - strand at 2308.765 kb on + strand at 2308.765 kb on + strand at 2308.766 kb on - strand at 2308.766 kb on - strand at 2308.801 kb on + strand at 2308.801 kb on + strand at 2308.821 kb on + strand at 2308.822 kb on - strand at 2308.822 kb on - strand at 2308.822 kb on - strand at 2308.891 kb on - strand at 2308.891 kb on - strand at 2308.911 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 2,307,986 + -0.7 2,308,012 + +0.0 2,308,013 - +0.7 2,308,013 - +0.6 2,308,017 + -0.0 2,308,017 + -0.4 2,308,062 - +0.4 2,308,062 - +0.9 2,308,754 - +0.1 2,308,765 + +0.1 2,308,765 + +0.8 2,308,766 - -0.1 2,308,766 - -1.1 2,308,801 + -0.3 2,308,801 + +1.2 2,308,821 + +0.1 2,308,822 - -0.1 2,308,822 - +0.3 2,308,822 - +0.2 2,308,891 - -0.2 2,308,891 - -0.2 2,308,911 + +0.2
Or see this region's nucleotide sequence