Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05910

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05900 and ABID97_RS05905 are separated by 13 nucleotidesABID97_RS05905 and ABID97_RS05910 are separated by 41 nucleotidesABID97_RS05910 and ABID97_RS05915 are separated by 38 nucleotides ABID97_RS05900: ABID97_RS05900 - enoyl-CoA hydratase, at 1,246,399 to 1,247,163 _RS05900 ABID97_RS05905: ABID97_RS05905 - acyl-CoA thioesterase, at 1,247,177 to 1,247,602 _RS05905 ABID97_RS05910: ABID97_RS05910 - ABC transporter ATP-binding protein/permease, at 1,247,644 to 1,249,521 _RS05910 ABID97_RS05915: ABID97_RS05915 - 2-hydroxyacid dehydrogenase, at 1,249,560 to 1,250,498 _RS05915 Position (kb) 1247 1248 1249 1250Strain fitness (log2 ratio) -1 0 1 2 3at 1247.230 kb on - strand, within ABID97_RS05905at 1247.230 kb on - strand, within ABID97_RS05905at 1247.260 kb on - strand, within ABID97_RS05905at 1247.343 kb on + strand, within ABID97_RS05905at 1247.343 kb on + strand, within ABID97_RS05905at 1247.427 kb on + strand, within ABID97_RS05905at 1247.428 kb on - strand, within ABID97_RS05905at 1247.753 kb on - strandat 1247.764 kb on + strandat 1247.764 kb on + strandat 1247.764 kb on + strandat 1247.764 kb on + strandat 1247.764 kb on + strandat 1247.765 kb on - strandat 1247.765 kb on - strandat 1248.143 kb on - strand, within ABID97_RS05910at 1248.247 kb on + strand, within ABID97_RS05910at 1248.247 kb on + strand, within ABID97_RS05910at 1248.247 kb on + strand, within ABID97_RS05910at 1248.248 kb on - strand, within ABID97_RS05910at 1248.248 kb on - strand, within ABID97_RS05910at 1248.248 kb on - strand, within ABID97_RS05910at 1248.248 kb on - strand, within ABID97_RS05910at 1248.248 kb on - strand, within ABID97_RS05910at 1248.248 kb on - strand, within ABID97_RS05910at 1248.248 kb on - strand, within ABID97_RS05910at 1248.248 kb on - strand, within ABID97_RS05910at 1248.355 kb on + strand, within ABID97_RS05910at 1248.356 kb on - strandat 1248.370 kb on + strand, within ABID97_RS05910at 1248.371 kb on - strand, within ABID97_RS05910at 1248.371 kb on - strand, within ABID97_RS05910at 1248.403 kb on + strand, within ABID97_RS05910at 1248.403 kb on + strand, within ABID97_RS05910at 1248.599 kb on - strand, within ABID97_RS05910at 1248.814 kb on + strand, within ABID97_RS05910at 1248.937 kb on + strand, within ABID97_RS05910at 1248.938 kb on - strand, within ABID97_RS05910at 1249.064 kb on - strand, within ABID97_RS05910at 1249.064 kb on - strand, within ABID97_RS05910at 1249.076 kb on - strand, within ABID97_RS05910at 1249.472 kb on - strandat 1249.520 kb on - strandat 1249.633 kb on - strandat 1249.644 kb on + strandat 1249.644 kb on + strandat 1249.645 kb on - strandat 1249.645 kb on - strandat 1249.645 kb on - strandat 1250.112 kb on + strand, within ABID97_RS05915at 1250.331 kb on + strand, within ABID97_RS05915at 1250.331 kb on + strand, within ABID97_RS05915at 1250.331 kb on + strand, within ABID97_RS05915at 1250.331 kb on + strand, within ABID97_RS05915at 1250.331 kb on + strand, within ABID97_RS05915at 1250.332 kb on - strand, within ABID97_RS05915

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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1,247,230 - ABID97_RS05905 0.12 +0.2
1,247,230 - ABID97_RS05905 0.12 +0.6
1,247,260 - ABID97_RS05905 0.19 -0.0
1,247,343 + ABID97_RS05905 0.39 +0.5
1,247,343 + ABID97_RS05905 0.39 -0.8
1,247,427 + ABID97_RS05905 0.59 +0.0
1,247,428 - ABID97_RS05905 0.59 +0.5
1,247,753 - +0.1
1,247,764 + +0.8
1,247,764 + +0.2
1,247,764 + -1.5
1,247,764 + +0.9
1,247,764 + +0.5
1,247,765 - +2.8
1,247,765 - +0.2
1,248,143 - ABID97_RS05910 0.27 +0.6
1,248,247 + ABID97_RS05910 0.32 -0.5
1,248,247 + ABID97_RS05910 0.32 +0.6
1,248,247 + ABID97_RS05910 0.32 +0.9
1,248,248 - ABID97_RS05910 0.32 +0.3
1,248,248 - ABID97_RS05910 0.32 +0.1
1,248,248 - ABID97_RS05910 0.32 +0.3
1,248,248 - ABID97_RS05910 0.32 +0.0
1,248,248 - ABID97_RS05910 0.32 +0.6
1,248,248 - ABID97_RS05910 0.32 +0.7
1,248,248 - ABID97_RS05910 0.32 +0.6
1,248,248 - ABID97_RS05910 0.32 +0.0
1,248,355 + ABID97_RS05910 0.38 +0.6
1,248,356 - +1.8
1,248,370 + ABID97_RS05910 0.39 +1.8
1,248,371 - ABID97_RS05910 0.39 +0.3
1,248,371 - ABID97_RS05910 0.39 -0.4
1,248,403 + ABID97_RS05910 0.40 +0.6
1,248,403 + ABID97_RS05910 0.40 +0.8
1,248,599 - ABID97_RS05910 0.51 +0.6
1,248,814 + ABID97_RS05910 0.62 +0.6
1,248,937 + ABID97_RS05910 0.69 +0.5
1,248,938 - ABID97_RS05910 0.69 +0.9
1,249,064 - ABID97_RS05910 0.76 +0.3
1,249,064 - ABID97_RS05910 0.76 +0.8
1,249,076 - ABID97_RS05910 0.76 +1.3
1,249,472 - +0.0
1,249,520 - +0.0
1,249,633 - +0.8
1,249,644 + +0.5
1,249,644 + +1.1
1,249,645 - +0.4
1,249,645 - +2.7
1,249,645 - +0.7
1,250,112 + ABID97_RS05915 0.59 +0.5
1,250,331 + ABID97_RS05915 0.82 +0.9
1,250,331 + ABID97_RS05915 0.82 +0.8
1,250,331 + ABID97_RS05915 0.82 +1.1
1,250,331 + ABID97_RS05915 0.82 +0.9
1,250,331 + ABID97_RS05915 0.82 +1.5
1,250,332 - ABID97_RS05915 0.82 +0.9

Or see this region's nucleotide sequence