Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04165

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04155 and ABID97_RS04160 are separated by 71 nucleotidesABID97_RS04160 and ABID97_RS04165 are separated by 123 nucleotidesABID97_RS04165 and ABID97_RS04170 are separated by 121 nucleotides ABID97_RS04155: ABID97_RS04155 - acyl-CoA carboxylase subunit beta, at 852,809 to 854,419 _RS04155 ABID97_RS04160: ABID97_RS04160 - MHYT domain-containing protein, at 854,491 to 855,264 _RS04160 ABID97_RS04165: ABID97_RS04165 - hypothetical protein, at 855,388 to 857,046 _RS04165 ABID97_RS04170: ABID97_RS04170 - DUF445 domain-containing protein, at 857,168 to 858,391 _RS04170 Position (kb) 855 856 857 858Strain fitness (log2 ratio) -2 -1 0 1 2 3at 854.492 kb on + strandat 854.555 kb on + strandat 854.555 kb on + strandat 854.555 kb on + strandat 854.555 kb on + strandat 854.606 kb on + strand, within ABID97_RS04160at 854.606 kb on + strand, within ABID97_RS04160at 854.606 kb on + strand, within ABID97_RS04160at 854.606 kb on + strand, within ABID97_RS04160at 854.607 kb on - strand, within ABID97_RS04160at 854.607 kb on - strand, within ABID97_RS04160at 854.607 kb on - strand, within ABID97_RS04160at 854.681 kb on + strand, within ABID97_RS04160at 854.681 kb on + strand, within ABID97_RS04160at 854.681 kb on + strand, within ABID97_RS04160at 854.682 kb on - strand, within ABID97_RS04160at 854.867 kb on + strand, within ABID97_RS04160at 854.867 kb on + strand, within ABID97_RS04160at 854.867 kb on + strand, within ABID97_RS04160at 854.867 kb on + strand, within ABID97_RS04160at 854.867 kb on + strand, within ABID97_RS04160at 854.867 kb on + strand, within ABID97_RS04160at 854.867 kb on + strand, within ABID97_RS04160at 854.868 kb on - strand, within ABID97_RS04160at 854.868 kb on - strand, within ABID97_RS04160at 854.868 kb on - strand, within ABID97_RS04160at 854.868 kb on - strand, within ABID97_RS04160at 854.869 kb on - strand, within ABID97_RS04160at 854.954 kb on + strand, within ABID97_RS04160at 854.954 kb on + strand, within ABID97_RS04160at 855.340 kb on + strandat 855.340 kb on + strandat 855.440 kb on + strandat 855.440 kb on + strandat 855.440 kb on + strandat 855.440 kb on + strandat 855.440 kb on + strandat 855.440 kb on + strandat 855.440 kb on + strandat 855.440 kb on + strandat 855.440 kb on + strandat 855.440 kb on + strandat 855.441 kb on - strandat 855.441 kb on - strandat 855.441 kb on - strandat 855.441 kb on - strandat 855.441 kb on - strandat 855.441 kb on - strandat 855.441 kb on - strandat 855.441 kb on - strandat 855.482 kb on + strandat 855.722 kb on + strand, within ABID97_RS04165at 855.722 kb on + strand, within ABID97_RS04165at 855.722 kb on + strand, within ABID97_RS04165at 856.223 kb on + strandat 856.223 kb on + strand, within ABID97_RS04165at 856.223 kb on + strand, within ABID97_RS04165at 856.223 kb on + strand, within ABID97_RS04165at 856.224 kb on - strand, within ABID97_RS04165at 856.598 kb on + strand, within ABID97_RS04165at 856.598 kb on + strand, within ABID97_RS04165at 856.599 kb on - strand, within ABID97_RS04165at 856.608 kb on + strand, within ABID97_RS04165at 856.609 kb on - strand, within ABID97_RS04165at 856.712 kb on + strand, within ABID97_RS04165at 856.713 kb on - strand, within ABID97_RS04165at 856.713 kb on - strand, within ABID97_RS04165at 856.827 kb on + strand, within ABID97_RS04165at 856.827 kb on + strand, within ABID97_RS04165at 856.828 kb on - strand, within ABID97_RS04165at 857.082 kb on + strandat 857.082 kb on + strandat 857.538 kb on + strand, within ABID97_RS04170at 857.538 kb on + strand, within ABID97_RS04170at 857.539 kb on - strand, within ABID97_RS04170at 857.763 kb on + strand, within ABID97_RS04170at 857.764 kb on - strand, within ABID97_RS04170at 857.764 kb on - strand, within ABID97_RS04170

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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854,492 + -0.3
854,555 + +0.7
854,555 + -0.0
854,555 + -0.3
854,555 + -0.0
854,606 + ABID97_RS04160 0.15 -0.2
854,606 + ABID97_RS04160 0.15 +0.4
854,606 + ABID97_RS04160 0.15 +1.2
854,606 + ABID97_RS04160 0.15 +0.3
854,607 - ABID97_RS04160 0.15 -0.0
854,607 - ABID97_RS04160 0.15 +0.1
854,607 - ABID97_RS04160 0.15 -0.2
854,681 + ABID97_RS04160 0.25 +0.1
854,681 + ABID97_RS04160 0.25 +0.2
854,681 + ABID97_RS04160 0.25 +0.6
854,682 - ABID97_RS04160 0.25 +0.7
854,867 + ABID97_RS04160 0.49 -1.3
854,867 + ABID97_RS04160 0.49 +0.5
854,867 + ABID97_RS04160 0.49 +0.1
854,867 + ABID97_RS04160 0.49 -0.7
854,867 + ABID97_RS04160 0.49 +0.6
854,867 + ABID97_RS04160 0.49 -0.9
854,867 + ABID97_RS04160 0.49 +1.4
854,868 - ABID97_RS04160 0.49 -0.2
854,868 - ABID97_RS04160 0.49 +0.1
854,868 - ABID97_RS04160 0.49 -0.2
854,868 - ABID97_RS04160 0.49 -0.4
854,869 - ABID97_RS04160 0.49 -2.6
854,954 + ABID97_RS04160 0.60 +0.7
854,954 + ABID97_RS04160 0.60 +0.0
855,340 + +0.2
855,340 + -0.0
855,440 + +0.1
855,440 + -1.6
855,440 + +0.1
855,440 + +0.2
855,440 + -0.8
855,440 + +0.5
855,440 + +0.1
855,440 + +0.4
855,440 + -0.7
855,440 + +1.4
855,441 - -0.8
855,441 - -0.2
855,441 - +0.4
855,441 - +0.3
855,441 - -0.1
855,441 - -0.3
855,441 - -0.6
855,441 - -0.5
855,482 + +0.0
855,722 + ABID97_RS04165 0.20 +0.1
855,722 + ABID97_RS04165 0.20 -0.2
855,722 + ABID97_RS04165 0.20 +0.6
856,223 + +0.8
856,223 + ABID97_RS04165 0.50 +0.1
856,223 + ABID97_RS04165 0.50 +0.9
856,223 + ABID97_RS04165 0.50 +0.3
856,224 - ABID97_RS04165 0.50 +0.4
856,598 + ABID97_RS04165 0.73 +0.2
856,598 + ABID97_RS04165 0.73 -0.2
856,599 - ABID97_RS04165 0.73 -0.9
856,608 + ABID97_RS04165 0.74 -0.5
856,609 - ABID97_RS04165 0.74 +1.5
856,712 + ABID97_RS04165 0.80 +3.0
856,713 - ABID97_RS04165 0.80 -0.3
856,713 - ABID97_RS04165 0.80 +0.0
856,827 + ABID97_RS04165 0.87 +0.5
856,827 + ABID97_RS04165 0.87 +0.8
856,828 - ABID97_RS04165 0.87 +0.2
857,082 + +0.1
857,082 + -0.6
857,538 + ABID97_RS04170 0.30 -0.6
857,538 + ABID97_RS04170 0.30 +0.6
857,539 - ABID97_RS04170 0.30 -0.5
857,763 + ABID97_RS04170 0.49 -0.3
857,764 - ABID97_RS04170 0.49 -0.2
857,764 - ABID97_RS04170 0.49 -0.1

Or see this region's nucleotide sequence