Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01060 and ABID97_RS01065 are separated by 64 nucleotides ABID97_RS01065 and ABID97_RS01070 overlap by 4 nucleotides ABID97_RS01070 and ABID97_RS01075 are separated by 84 nucleotides
ABID97_RS01060: ABID97_RS01060 - SDR family NAD(P)-dependent oxidoreductase, at 213,933 to 214,697
_RS01060
ABID97_RS01065: ABID97_RS01065 - hypothetical protein, at 214,762 to 215,232
_RS01065
ABID97_RS01070: ABID97_RS01070 - Crp/Fnr family transcriptional regulator, at 215,229 to 215,999
_RS01070
ABID97_RS01075: ABID97_RS01075 - AMP-binding protein, at 216,084 to 218,039
_RS01075
Position (kb) 215
216 Strain fitness (log2 ratio) -2
-1
0
1 at 214.732 kb on + strand at 215.180 kb on + strand, within ABID97_RS01065 at 215.181 kb on - strand, within ABID97_RS01065 at 215.181 kb on - strand, within ABID97_RS01065 at 215.398 kb on + strand, within ABID97_RS01070 at 215.663 kb on - strand, within ABID97_RS01070 at 216.017 kb on + strand at 216.018 kb on - strand at 216.018 kb on - strand at 216.027 kb on - strand at 216.027 kb on - strand at 216.069 kb on + strand at 216.304 kb on - strand, within ABID97_RS01075 at 216.304 kb on - strand, within ABID97_RS01075 at 216.555 kb on + strand, within ABID97_RS01075 at 216.660 kb on + strand, within ABID97_RS01075 at 216.660 kb on + strand, within ABID97_RS01075 at 216.909 kb on + strand, within ABID97_RS01075 at 216.912 kb on + strand, within ABID97_RS01075
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 214,732 + -1.2 215,180 + ABID97_RS01065 0.89 -0.0 215,181 - ABID97_RS01065 0.89 +0.1 215,181 - ABID97_RS01065 0.89 -0.3 215,398 + ABID97_RS01070 0.22 -0.5 215,663 - ABID97_RS01070 0.56 +1.0 216,017 + -0.3 216,018 - -0.0 216,018 - +0.5 216,027 - -0.6 216,027 - +1.2 216,069 + -2.2 216,304 - ABID97_RS01075 0.11 +0.8 216,304 - ABID97_RS01075 0.11 +1.4 216,555 + ABID97_RS01075 0.24 -0.1 216,660 + ABID97_RS01075 0.29 +0.0 216,660 + ABID97_RS01075 0.29 +0.8 216,909 + ABID97_RS01075 0.42 +0.9 216,912 + ABID97_RS01075 0.42 -0.2
Or see this region's nucleotide sequence