Strain Fitness in Escherichia coli BW25113 around b1095

Experiment: casaminos (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfabG and acpP are separated by 210 nucleotidesacpP and fabF are separated by 87 nucleotidesfabF and pabC are separated by 119 nucleotidespabC and yceG are separated by 2 nucleotides b1093: fabG - 3-oxoacyl-[acyl-carrier-protein] reductase (NCBI), at 1,149,893 to 1,150,627 fabG b1094: acpP - acyl carrier protein (NCBI), at 1,150,838 to 1,151,074 acpP b1095: fabF - 3-oxoacyl-(acyl carrier protein) synthase (NCBI), at 1,151,162 to 1,152,403 fabF b1096: pabC - 4-amino-4-deoxychorismate lyase (NCBI), at 1,152,523 to 1,153,332 pabC b1097: yceG - predicted aminodeoxychorismate lyase (NCBI), at 1,153,335 to 1,154,357 yceG Position (kb) 1151 1152 1153Strain fitness (log2 ratio) -1 0 1at 1151.238 kb on + strandat 1151.266 kb on + strandat 1151.266 kb on + strandat 1151.368 kb on - strand, within fabFat 1151.416 kb on - strand, within fabFat 1151.427 kb on - strand, within fabFat 1151.427 kb on - strand, within fabFat 1151.530 kb on - strand, within fabFat 1151.530 kb on - strand, within fabFat 1151.535 kb on - strand, within fabFat 1151.535 kb on - strand, within fabFat 1151.608 kb on + strand, within fabFat 1151.608 kb on + strand, within fabFat 1151.610 kb on + strand, within fabFat 1151.697 kb on - strandat 1151.697 kb on - strand, within fabFat 1151.703 kb on - strand, within fabFat 1151.783 kb on + strand, within fabFat 1152.010 kb on - strand, within fabFat 1152.010 kb on - strand, within fabFat 1152.177 kb on - strand, within fabFat 1152.219 kb on + strand, within fabFat 1152.219 kb on + strand, within fabFat 1152.219 kb on + strand, within fabFat 1152.332 kb on + strandat 1152.335 kb on + strandat 1152.361 kb on - strandat 1152.361 kb on - strandat 1152.420 kb on + strandat 1152.420 kb on + strandat 1152.474 kb on - strandat 1152.482 kb on - strandat 1152.520 kb on + strandat 1152.520 kb on + strandat 1152.558 kb on + strandat 1152.676 kb on - strand, within pabCat 1152.788 kb on + strand, within pabCat 1152.788 kb on + strand, within pabCat 1152.876 kb on + strand, within pabCat 1152.902 kb on - strand, within pabCat 1152.909 kb on + strand, within pabCat 1152.909 kb on + strand, within pabCat 1153.012 kb on + strand, within pabCat 1153.171 kb on + strand, within pabCat 1153.177 kb on + strand, within pabCat 1153.208 kb on - strand, within pabCat 1153.223 kb on + strand, within pabCat 1153.301 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
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1,151,238 + +0.7
1,151,266 + +0.4
1,151,266 + -1.5
1,151,368 - fabF b1095 0.17 +0.9
1,151,416 - fabF b1095 0.20 +0.6
1,151,427 - fabF b1095 0.21 +0.8
1,151,427 - fabF b1095 0.21 +1.3
1,151,530 - fabF b1095 0.30 +0.5
1,151,530 - fabF b1095 0.30 -0.0
1,151,535 - fabF b1095 0.30 +0.3
1,151,535 - fabF b1095 0.30 -0.3
1,151,608 + fabF b1095 0.36 +0.3
1,151,608 + fabF b1095 0.36 +0.2
1,151,610 + fabF b1095 0.36 -0.4
1,151,697 - -0.7
1,151,697 - fabF b1095 0.43 +0.0
1,151,703 - fabF b1095 0.44 +0.5
1,151,783 + fabF b1095 0.50 -0.1
1,152,010 - fabF b1095 0.68 -0.3
1,152,010 - fabF b1095 0.68 -1.2
1,152,177 - fabF b1095 0.82 -0.3
1,152,219 + fabF b1095 0.85 +1.5
1,152,219 + fabF b1095 0.85 +0.3
1,152,219 + fabF b1095 0.85 +0.3
1,152,332 + +0.3
1,152,335 + +0.7
1,152,361 - -0.2
1,152,361 - +0.9
1,152,420 + -0.4
1,152,420 + -0.3
1,152,474 - +0.4
1,152,482 - -0.5
1,152,520 + -1.1
1,152,520 + -1.1
1,152,558 + +1.0
1,152,676 - pabC b1096 0.19 +1.0
1,152,788 + pabC b1096 0.33 +0.2
1,152,788 + pabC b1096 0.33 +0.9
1,152,876 + pabC b1096 0.44 -0.1
1,152,902 - pabC b1096 0.47 -1.1
1,152,909 + pabC b1096 0.48 +0.2
1,152,909 + pabC b1096 0.48 -0.6
1,153,012 + pabC b1096 0.60 -0.4
1,153,171 + pabC b1096 0.80 -0.4
1,153,177 + pabC b1096 0.81 -0.3
1,153,208 - pabC b1096 0.85 -0.6
1,153,223 + pabC b1096 0.86 +0.5
1,153,301 - +0.4

Or see this region's nucleotide sequence