Strain Fitness in Serratia liquefaciens MT49 around IAI46_25060

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_25050 and IAI46_25055 are separated by 5 nucleotidesIAI46_25055 and IAI46_25060 are separated by 61 nucleotidesIAI46_25060 and IAI46_25065 are separated by 24 nucleotidesIAI46_25065 and IAI46_25070 are separated by 6 nucleotides IAI46_25050: IAI46_25050 - ribose operon transcriptional repressor RbsR, at 5,348,346 to 5,349,347 _25050 IAI46_25055: IAI46_25055 - ribokinase, at 5,349,353 to 5,350,279 _25055 IAI46_25060: IAI46_25060 - ribose ABC transporter substrate-binding protein RbsB, at 5,350,341 to 5,351,228 _25060 IAI46_25065: IAI46_25065 - ribose ABC transporter permease, at 5,351,253 to 5,352,218 _25065 IAI46_25070: IAI46_25070 - ribose ABC transporter ATP-binding protein RbsA, at 5,352,225 to 5,353,730 _25070 Position (kb) 5350 5351 5352Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5349.354 kb on + strandat 5349.532 kb on + strand, within IAI46_25055at 5349.532 kb on + strand, within IAI46_25055at 5349.535 kb on + strand, within IAI46_25055at 5349.535 kb on + strand, within IAI46_25055at 5349.536 kb on - strand, within IAI46_25055at 5349.536 kb on - strand, within IAI46_25055at 5349.547 kb on + strand, within IAI46_25055at 5349.695 kb on - strand, within IAI46_25055at 5349.695 kb on - strand, within IAI46_25055at 5349.730 kb on + strand, within IAI46_25055at 5349.731 kb on - strand, within IAI46_25055at 5349.736 kb on + strand, within IAI46_25055at 5349.736 kb on + strand, within IAI46_25055at 5349.737 kb on - strand, within IAI46_25055at 5349.737 kb on - strand, within IAI46_25055at 5349.752 kb on + strand, within IAI46_25055at 5349.753 kb on - strand, within IAI46_25055at 5349.753 kb on - strand, within IAI46_25055at 5349.900 kb on + strand, within IAI46_25055at 5349.912 kb on + strand, within IAI46_25055at 5350.016 kb on - strand, within IAI46_25055at 5350.016 kb on - strand, within IAI46_25055at 5350.016 kb on - strand, within IAI46_25055at 5350.023 kb on - strand, within IAI46_25055at 5350.034 kb on - strand, within IAI46_25055at 5350.112 kb on - strand, within IAI46_25055at 5350.112 kb on - strand, within IAI46_25055at 5350.174 kb on + strand, within IAI46_25055at 5350.174 kb on + strand, within IAI46_25055at 5350.174 kb on + strand, within IAI46_25055at 5350.175 kb on - strand, within IAI46_25055at 5350.175 kb on - strand, within IAI46_25055at 5350.176 kb on + strand, within IAI46_25055at 5350.177 kb on - strand, within IAI46_25055at 5350.177 kb on - strand, within IAI46_25055at 5350.225 kb on + strandat 5350.225 kb on + strandat 5350.226 kb on - strandat 5350.226 kb on - strandat 5350.226 kb on - strandat 5350.231 kb on + strandat 5350.232 kb on - strandat 5350.246 kb on + strandat 5350.267 kb on + strandat 5350.267 kb on + strandat 5350.267 kb on + strandat 5350.267 kb on + strandat 5350.267 kb on + strandat 5350.268 kb on - strandat 5350.268 kb on - strandat 5350.268 kb on - strandat 5350.268 kb on - strandat 5350.268 kb on - strandat 5350.297 kb on + strandat 5350.298 kb on - strandat 5350.309 kb on + strandat 5350.309 kb on + strandat 5350.310 kb on - strandat 5350.310 kb on - strandat 5350.310 kb on - strandat 5350.336 kb on - strandat 5350.336 kb on - strandat 5350.342 kb on + strandat 5350.342 kb on + strandat 5350.343 kb on - strandat 5350.343 kb on - strandat 5350.377 kb on - strandat 5350.419 kb on + strandat 5350.420 kb on - strandat 5350.718 kb on + strand, within IAI46_25060at 5350.718 kb on + strand, within IAI46_25060at 5350.718 kb on + strand, within IAI46_25060at 5350.719 kb on - strand, within IAI46_25060at 5350.782 kb on - strand, within IAI46_25060at 5350.854 kb on - strand, within IAI46_25060at 5350.898 kb on + strand, within IAI46_25060at 5350.964 kb on + strand, within IAI46_25060at 5350.980 kb on - strand, within IAI46_25060at 5351.031 kb on - strand, within IAI46_25060at 5351.060 kb on - strand, within IAI46_25060at 5351.243 kb on + strandat 5351.243 kb on + strandat 5351.243 kb on + strandat 5351.244 kb on - strandat 5351.254 kb on + strandat 5351.255 kb on - strandat 5351.293 kb on - strandat 5351.323 kb on + strandat 5351.324 kb on - strandat 5351.324 kb on - strandat 5351.324 kb on - strandat 5351.340 kb on + strandat 5351.391 kb on - strand, within IAI46_25065at 5351.551 kb on + strand, within IAI46_25065at 5351.552 kb on - strand, within IAI46_25065at 5351.552 kb on - strand, within IAI46_25065at 5351.623 kb on + strand, within IAI46_25065at 5351.623 kb on + strand, within IAI46_25065at 5351.624 kb on - strand, within IAI46_25065at 5351.627 kb on + strand, within IAI46_25065at 5351.627 kb on + strand, within IAI46_25065at 5351.627 kb on + strand, within IAI46_25065at 5351.627 kb on + strand, within IAI46_25065at 5351.628 kb on - strand, within IAI46_25065at 5351.628 kb on - strand, within IAI46_25065at 5351.628 kb on - strand, within IAI46_25065at 5351.630 kb on - strand, within IAI46_25065at 5351.646 kb on - strand, within IAI46_25065at 5351.659 kb on + strand, within IAI46_25065at 5351.659 kb on + strand, within IAI46_25065at 5351.659 kb on + strand, within IAI46_25065at 5351.660 kb on - strand, within IAI46_25065at 5351.660 kb on - strand, within IAI46_25065at 5351.660 kb on - strand, within IAI46_25065at 5351.672 kb on + strand, within IAI46_25065at 5351.697 kb on - strand, within IAI46_25065at 5351.760 kb on - strand, within IAI46_25065at 5351.791 kb on + strand, within IAI46_25065at 5351.791 kb on + strand, within IAI46_25065at 5351.791 kb on + strand, within IAI46_25065at 5351.792 kb on - strand, within IAI46_25065at 5351.792 kb on - strand, within IAI46_25065at 5351.880 kb on - strand, within IAI46_25065at 5352.048 kb on - strand, within IAI46_25065at 5352.077 kb on + strand, within IAI46_25065at 5352.078 kb on - strand, within IAI46_25065at 5352.078 kb on - strand, within IAI46_25065at 5352.089 kb on + strand, within IAI46_25065at 5352.090 kb on - strand, within IAI46_25065at 5352.093 kb on + strand, within IAI46_25065at 5352.093 kb on + strand, within IAI46_25065at 5352.093 kb on + strand, within IAI46_25065at 5352.094 kb on - strand, within IAI46_25065at 5352.094 kb on - strand, within IAI46_25065at 5352.169 kb on - strandat 5352.182 kb on + strandat 5352.183 kb on - strandat 5352.218 kb on + strandat 5352.219 kb on - strandat 5352.226 kb on + strandat 5352.226 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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5,349,354 + -1.4
5,349,532 + IAI46_25055 0.19 +0.3
5,349,532 + IAI46_25055 0.19 +0.1
5,349,535 + IAI46_25055 0.20 +1.4
5,349,535 + IAI46_25055 0.20 -0.3
5,349,536 - IAI46_25055 0.20 -0.3
5,349,536 - IAI46_25055 0.20 -0.9
5,349,547 + IAI46_25055 0.21 +0.5
5,349,695 - IAI46_25055 0.37 +0.4
5,349,695 - IAI46_25055 0.37 -1.0
5,349,730 + IAI46_25055 0.41 -2.3
5,349,731 - IAI46_25055 0.41 -0.3
5,349,736 + IAI46_25055 0.41 +0.2
5,349,736 + IAI46_25055 0.41 +0.4
5,349,737 - IAI46_25055 0.41 -0.5
5,349,737 - IAI46_25055 0.41 -0.3
5,349,752 + IAI46_25055 0.43 +0.0
5,349,753 - IAI46_25055 0.43 +0.4
5,349,753 - IAI46_25055 0.43 +0.2
5,349,900 + IAI46_25055 0.59 +0.7
5,349,912 + IAI46_25055 0.60 -0.6
5,350,016 - IAI46_25055 0.72 +0.0
5,350,016 - IAI46_25055 0.72 -0.2
5,350,016 - IAI46_25055 0.72 -0.3
5,350,023 - IAI46_25055 0.72 -0.4
5,350,034 - IAI46_25055 0.73 -0.4
5,350,112 - IAI46_25055 0.82 +0.6
5,350,112 - IAI46_25055 0.82 -1.2
5,350,174 + IAI46_25055 0.89 +1.7
5,350,174 + IAI46_25055 0.89 -1.3
5,350,174 + IAI46_25055 0.89 +0.1
5,350,175 - IAI46_25055 0.89 +1.3
5,350,175 - IAI46_25055 0.89 -0.2
5,350,176 + IAI46_25055 0.89 +0.7
5,350,177 - IAI46_25055 0.89 -0.1
5,350,177 - IAI46_25055 0.89 -0.2
5,350,225 + -0.5
5,350,225 + +0.2
5,350,226 - +0.5
5,350,226 - -0.6
5,350,226 - +0.2
5,350,231 + -0.7
5,350,232 - -1.3
5,350,246 + -0.8
5,350,267 + +0.7
5,350,267 + +0.2
5,350,267 + -0.0
5,350,267 + +0.6
5,350,267 + -0.0
5,350,268 - +0.2
5,350,268 - -0.3
5,350,268 - -3.0
5,350,268 - -0.6
5,350,268 - -1.0
5,350,297 + -0.7
5,350,298 - +0.0
5,350,309 + +0.9
5,350,309 + -0.3
5,350,310 - -0.6
5,350,310 - -2.0
5,350,310 - -0.3
5,350,336 - -1.4
5,350,336 - -0.3
5,350,342 + +0.0
5,350,342 + +0.7
5,350,343 - +0.6
5,350,343 - -0.2
5,350,377 - +0.0
5,350,419 + -0.5
5,350,420 - +0.1
5,350,718 + IAI46_25060 0.42 -0.0
5,350,718 + IAI46_25060 0.42 -0.4
5,350,718 + IAI46_25060 0.42 -0.6
5,350,719 - IAI46_25060 0.43 +1.0
5,350,782 - IAI46_25060 0.50 -0.3
5,350,854 - IAI46_25060 0.58 +0.2
5,350,898 + IAI46_25060 0.63 -0.2
5,350,964 + IAI46_25060 0.70 -0.1
5,350,980 - IAI46_25060 0.72 -0.6
5,351,031 - IAI46_25060 0.78 +0.4
5,351,060 - IAI46_25060 0.81 +2.7
5,351,243 + +0.1
5,351,243 + +0.8
5,351,243 + -0.4
5,351,244 - -0.7
5,351,254 + -1.9
5,351,255 - -0.5
5,351,293 - -0.1
5,351,323 + +0.1
5,351,324 - +0.1
5,351,324 - -0.2
5,351,324 - -1.7
5,351,340 + -0.6
5,351,391 - IAI46_25065 0.14 -2.0
5,351,551 + IAI46_25065 0.31 -0.5
5,351,552 - IAI46_25065 0.31 +0.0
5,351,552 - IAI46_25065 0.31 +0.0
5,351,623 + IAI46_25065 0.38 +1.1
5,351,623 + IAI46_25065 0.38 -0.4
5,351,624 - IAI46_25065 0.38 -0.1
5,351,627 + IAI46_25065 0.39 -0.1
5,351,627 + IAI46_25065 0.39 -0.4
5,351,627 + IAI46_25065 0.39 +0.0
5,351,627 + IAI46_25065 0.39 -0.0
5,351,628 - IAI46_25065 0.39 +0.3
5,351,628 - IAI46_25065 0.39 +0.5
5,351,628 - IAI46_25065 0.39 -0.5
5,351,630 - IAI46_25065 0.39 +0.7
5,351,646 - IAI46_25065 0.41 -1.0
5,351,659 + IAI46_25065 0.42 +0.3
5,351,659 + IAI46_25065 0.42 +0.1
5,351,659 + IAI46_25065 0.42 -0.2
5,351,660 - IAI46_25065 0.42 +1.0
5,351,660 - IAI46_25065 0.42 +0.3
5,351,660 - IAI46_25065 0.42 +0.2
5,351,672 + IAI46_25065 0.43 +0.6
5,351,697 - IAI46_25065 0.46 -0.2
5,351,760 - IAI46_25065 0.52 -0.4
5,351,791 + IAI46_25065 0.56 +0.0
5,351,791 + IAI46_25065 0.56 +0.3
5,351,791 + IAI46_25065 0.56 +1.2
5,351,792 - IAI46_25065 0.56 +1.6
5,351,792 - IAI46_25065 0.56 -0.5
5,351,880 - IAI46_25065 0.65 -0.7
5,352,048 - IAI46_25065 0.82 -1.0
5,352,077 + IAI46_25065 0.85 -0.5
5,352,078 - IAI46_25065 0.85 -0.6
5,352,078 - IAI46_25065 0.85 -0.3
5,352,089 + IAI46_25065 0.87 +0.4
5,352,090 - IAI46_25065 0.87 -0.4
5,352,093 + IAI46_25065 0.87 -0.3
5,352,093 + IAI46_25065 0.87 +0.2
5,352,093 + IAI46_25065 0.87 +0.5
5,352,094 - IAI46_25065 0.87 +0.1
5,352,094 - IAI46_25065 0.87 -0.1
5,352,169 - +0.4
5,352,182 + +0.4
5,352,183 - -1.0
5,352,218 + +0.5
5,352,219 - -0.5
5,352,226 + +0.8
5,352,226 + -0.5

Or see this region's nucleotide sequence