Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_24955 and IAI46_24960 are separated by 8 nucleotides IAI46_24960 and IAI46_24965 are separated by 112 nucleotides IAI46_24965 and IAI46_24970 are separated by 35 nucleotides
IAI46_24955: IAI46_24955 - nitrogen regulation protein NR(II), at 5,326,174 to 5,327,223
_24955
IAI46_24960: IAI46_24960 - nitrogen regulation protein NR(I), at 5,327,232 to 5,328,644
_24960
IAI46_24965: IAI46_24965 - YshB family small membrane protein, at 5,328,757 to 5,328,879
_24965
IAI46_24970: IAI46_24970 - oxygen-independent coproporphyrinogen III oxidase, at 5,328,915 to 5,330,288
_24970
Position (kb) 5327
5328
5329 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5326.346 kb on - strand, within IAI46_24955 at 5326.443 kb on + strand, within IAI46_24955 at 5326.480 kb on + strand, within IAI46_24955 at 5326.480 kb on + strand, within IAI46_24955 at 5326.480 kb on + strand, within IAI46_24955 at 5326.480 kb on + strand, within IAI46_24955 at 5326.481 kb on - strand, within IAI46_24955 at 5326.481 kb on - strand, within IAI46_24955 at 5326.481 kb on - strand, within IAI46_24955 at 5326.481 kb on - strand, within IAI46_24955 at 5326.481 kb on - strand, within IAI46_24955 at 5326.481 kb on - strand, within IAI46_24955 at 5326.481 kb on - strand, within IAI46_24955 at 5326.481 kb on - strand, within IAI46_24955 at 5326.483 kb on - strand, within IAI46_24955 at 5326.844 kb on - strand, within IAI46_24955 at 5326.895 kb on + strand, within IAI46_24955 at 5326.895 kb on + strand, within IAI46_24955 at 5326.896 kb on - strand, within IAI46_24955 at 5326.896 kb on - strand, within IAI46_24955 at 5326.896 kb on - strand, within IAI46_24955 at 5326.968 kb on + strand, within IAI46_24955 at 5327.019 kb on + strand, within IAI46_24955 at 5327.019 kb on + strand, within IAI46_24955 at 5327.020 kb on - strand, within IAI46_24955 at 5327.020 kb on - strand, within IAI46_24955 at 5327.027 kb on + strand, within IAI46_24955 at 5327.028 kb on - strand, within IAI46_24955 at 5327.028 kb on - strand, within IAI46_24955 at 5327.072 kb on + strand, within IAI46_24955 at 5327.139 kb on + strand at 5327.139 kb on + strand at 5327.212 kb on - strand at 5327.212 kb on - strand at 5327.245 kb on + strand at 5327.246 kb on - strand at 5327.267 kb on + strand at 5327.268 kb on - strand at 5327.470 kb on + strand, within IAI46_24960 at 5327.532 kb on + strand, within IAI46_24960 at 5327.575 kb on + strand, within IAI46_24960 at 5327.726 kb on - strand, within IAI46_24960 at 5327.823 kb on - strand, within IAI46_24960 at 5328.055 kb on + strand, within IAI46_24960 at 5328.056 kb on - strand, within IAI46_24960 at 5328.056 kb on - strand, within IAI46_24960 at 5328.186 kb on - strand, within IAI46_24960 at 5328.204 kb on + strand, within IAI46_24960 at 5328.204 kb on + strand, within IAI46_24960 at 5328.204 kb on + strand, within IAI46_24960 at 5328.300 kb on - strand, within IAI46_24960 at 5328.300 kb on - strand, within IAI46_24960 at 5328.335 kb on - strand, within IAI46_24960 at 5328.362 kb on - strand, within IAI46_24960 at 5328.376 kb on + strand, within IAI46_24960 at 5328.376 kb on + strand, within IAI46_24960 at 5328.376 kb on + strand, within IAI46_24960 at 5328.376 kb on + strand, within IAI46_24960 at 5328.377 kb on - strand, within IAI46_24960 at 5328.422 kb on + strand, within IAI46_24960 at 5328.554 kb on + strand at 5328.566 kb on + strand at 5328.567 kb on - strand at 5328.605 kb on + strand at 5328.606 kb on - strand at 5328.642 kb on + strand at 5328.642 kb on + strand at 5328.643 kb on - strand at 5328.643 kb on - strand at 5328.661 kb on + strand at 5328.662 kb on - strand at 5328.662 kb on - strand at 5328.695 kb on - strand at 5328.706 kb on + strand at 5328.726 kb on + strand at 5328.726 kb on + strand at 5328.726 kb on + strand at 5328.726 kb on + strand at 5328.726 kb on + strand at 5328.865 kb on - strand, within IAI46_24965 at 5328.865 kb on - strand, within IAI46_24965 at 5328.865 kb on - strand, within IAI46_24965 at 5328.909 kb on + strand at 5328.909 kb on + strand at 5328.921 kb on - strand at 5328.961 kb on + strand at 5328.961 kb on + strand at 5328.961 kb on + strand at 5328.961 kb on + strand at 5328.961 kb on + strand at 5328.962 kb on - strand at 5328.962 kb on - strand at 5328.966 kb on - strand at 5328.966 kb on - strand at 5328.966 kb on - strand at 5328.984 kb on - strand at 5328.984 kb on - strand at 5328.997 kb on - strand at 5329.094 kb on - strand, within IAI46_24970 at 5329.094 kb on - strand, within IAI46_24970 at 5329.125 kb on + strand, within IAI46_24970 at 5329.125 kb on + strand, within IAI46_24970 at 5329.125 kb on + strand, within IAI46_24970 at 5329.126 kb on - strand, within IAI46_24970 at 5329.126 kb on - strand, within IAI46_24970 at 5329.126 kb on - strand, within IAI46_24970 at 5329.126 kb on - strand, within IAI46_24970 at 5329.135 kb on + strand, within IAI46_24970 at 5329.136 kb on - strand, within IAI46_24970 at 5329.136 kb on - strand, within IAI46_24970 at 5329.136 kb on - strand, within IAI46_24970 at 5329.252 kb on + strand, within IAI46_24970 at 5329.282 kb on + strand, within IAI46_24970 at 5329.282 kb on + strand, within IAI46_24970 at 5329.282 kb on + strand, within IAI46_24970 at 5329.282 kb on + strand, within IAI46_24970 at 5329.282 kb on + strand, within IAI46_24970 at 5329.282 kb on + strand, within IAI46_24970 at 5329.282 kb on + strand, within IAI46_24970 at 5329.283 kb on - strand, within IAI46_24970 at 5329.283 kb on - strand, within IAI46_24970 at 5329.283 kb on - strand, within IAI46_24970 at 5329.283 kb on - strand, within IAI46_24970 at 5329.283 kb on - strand, within IAI46_24970 at 5329.349 kb on + strand, within IAI46_24970 at 5329.350 kb on - strand, within IAI46_24970 at 5329.350 kb on - strand, within IAI46_24970 at 5329.351 kb on + strand, within IAI46_24970 at 5329.351 kb on + strand, within IAI46_24970 at 5329.351 kb on + strand, within IAI46_24970 at 5329.351 kb on + strand, within IAI46_24970 at 5329.352 kb on - strand, within IAI46_24970 at 5329.437 kb on - strand, within IAI46_24970 at 5329.557 kb on - strand, within IAI46_24970 at 5329.564 kb on + strand, within IAI46_24970 at 5329.564 kb on + strand, within IAI46_24970 at 5329.565 kb on - strand, within IAI46_24970 at 5329.565 kb on - strand, within IAI46_24970 at 5329.565 kb on - strand, within IAI46_24970 at 5329.565 kb on - strand, within IAI46_24970 at 5329.568 kb on + strand, within IAI46_24970 at 5329.568 kb on + strand, within IAI46_24970 at 5329.568 kb on + strand, within IAI46_24970 at 5329.569 kb on - strand, within IAI46_24970 at 5329.569 kb on - strand, within IAI46_24970 at 5329.572 kb on + strand, within IAI46_24970 at 5329.593 kb on + strand, within IAI46_24970 at 5329.593 kb on + strand, within IAI46_24970 at 5329.593 kb on + strand, within IAI46_24970 at 5329.593 kb on + strand, within IAI46_24970 at 5329.594 kb on - strand, within IAI46_24970 at 5329.594 kb on - strand, within IAI46_24970 at 5329.618 kb on + strand, within IAI46_24970 at 5329.618 kb on + strand, within IAI46_24970 at 5329.618 kb on + strand, within IAI46_24970 at 5329.619 kb on - strand, within IAI46_24970
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic remove 5,326,346 - IAI46_24955 0.16 -0.9 5,326,443 + IAI46_24955 0.26 +1.1 5,326,480 + IAI46_24955 0.29 +0.7 5,326,480 + IAI46_24955 0.29 -1.4 5,326,480 + IAI46_24955 0.29 +1.6 5,326,480 + IAI46_24955 0.29 +0.7 5,326,481 - IAI46_24955 0.29 +1.4 5,326,481 - IAI46_24955 0.29 -0.6 5,326,481 - IAI46_24955 0.29 +0.1 5,326,481 - IAI46_24955 0.29 -1.1 5,326,481 - IAI46_24955 0.29 -0.2 5,326,481 - IAI46_24955 0.29 +1.4 5,326,481 - IAI46_24955 0.29 -1.2 5,326,481 - IAI46_24955 0.29 -1.0 5,326,483 - IAI46_24955 0.29 -0.8 5,326,844 - IAI46_24955 0.64 +0.4 5,326,895 + IAI46_24955 0.69 -1.2 5,326,895 + IAI46_24955 0.69 -1.6 5,326,896 - IAI46_24955 0.69 +0.1 5,326,896 - IAI46_24955 0.69 -0.6 5,326,896 - IAI46_24955 0.69 +0.0 5,326,968 + IAI46_24955 0.76 -0.2 5,327,019 + IAI46_24955 0.80 -0.1 5,327,019 + IAI46_24955 0.80 -0.1 5,327,020 - IAI46_24955 0.81 -0.7 5,327,020 - IAI46_24955 0.81 +2.0 5,327,027 + IAI46_24955 0.81 +0.8 5,327,028 - IAI46_24955 0.81 +0.7 5,327,028 - IAI46_24955 0.81 -0.9 5,327,072 + IAI46_24955 0.86 -1.3 5,327,139 + -0.6 5,327,139 + +1.0 5,327,212 - +0.0 5,327,212 - +0.1 5,327,245 + +0.5 5,327,246 - +0.9 5,327,267 + -0.8 5,327,268 - +0.2 5,327,470 + IAI46_24960 0.17 +0.6 5,327,532 + IAI46_24960 0.21 -1.1 5,327,575 + IAI46_24960 0.24 -1.0 5,327,726 - IAI46_24960 0.35 -0.6 5,327,823 - IAI46_24960 0.42 -1.1 5,328,055 + IAI46_24960 0.58 +0.3 5,328,056 - IAI46_24960 0.58 -0.9 5,328,056 - IAI46_24960 0.58 +0.4 5,328,186 - IAI46_24960 0.68 -0.5 5,328,204 + IAI46_24960 0.69 -1.5 5,328,204 + IAI46_24960 0.69 +0.8 5,328,204 + IAI46_24960 0.69 -0.2 5,328,300 - IAI46_24960 0.76 +0.5 5,328,300 - IAI46_24960 0.76 -0.6 5,328,335 - IAI46_24960 0.78 -0.5 5,328,362 - IAI46_24960 0.80 +0.6 5,328,376 + IAI46_24960 0.81 -0.2 5,328,376 + IAI46_24960 0.81 +0.8 5,328,376 + IAI46_24960 0.81 +1.0 5,328,376 + IAI46_24960 0.81 +0.8 5,328,377 - IAI46_24960 0.81 -0.1 5,328,422 + IAI46_24960 0.84 +1.1 5,328,554 + -1.6 5,328,566 + -0.1 5,328,567 - -0.5 5,328,605 + +0.1 5,328,606 - +0.1 5,328,642 + +0.2 5,328,642 + -0.7 5,328,643 - +0.5 5,328,643 - -0.1 5,328,661 + +0.4 5,328,662 - -1.9 5,328,662 - +0.2 5,328,695 - -0.6 5,328,706 + -0.1 5,328,726 + +1.0 5,328,726 + +1.6 5,328,726 + -0.3 5,328,726 + -0.2 5,328,726 + +0.1 5,328,865 - IAI46_24965 0.88 +0.3 5,328,865 - IAI46_24965 0.88 -2.3 5,328,865 - IAI46_24965 0.88 -0.5 5,328,909 + -0.4 5,328,909 + +0.8 5,328,921 - -0.6 5,328,961 + -0.7 5,328,961 + -0.6 5,328,961 + -0.4 5,328,961 + -0.6 5,328,961 + +0.1 5,328,962 - -0.7 5,328,962 - -1.1 5,328,966 - +0.0 5,328,966 - -0.6 5,328,966 - -1.5 5,328,984 - -0.7 5,328,984 - -1.1 5,328,997 - -0.2 5,329,094 - IAI46_24970 0.13 +1.2 5,329,094 - IAI46_24970 0.13 -0.4 5,329,125 + IAI46_24970 0.15 +0.8 5,329,125 + IAI46_24970 0.15 +0.5 5,329,125 + IAI46_24970 0.15 -1.7 5,329,126 - IAI46_24970 0.15 +0.0 5,329,126 - IAI46_24970 0.15 -0.8 5,329,126 - IAI46_24970 0.15 +0.6 5,329,126 - IAI46_24970 0.15 -1.0 5,329,135 + IAI46_24970 0.16 -0.4 5,329,136 - IAI46_24970 0.16 -0.3 5,329,136 - IAI46_24970 0.16 +0.0 5,329,136 - IAI46_24970 0.16 +0.3 5,329,252 + IAI46_24970 0.25 -0.8 5,329,282 + IAI46_24970 0.27 -0.4 5,329,282 + IAI46_24970 0.27 -0.7 5,329,282 + IAI46_24970 0.27 -1.7 5,329,282 + IAI46_24970 0.27 -0.7 5,329,282 + IAI46_24970 0.27 -0.4 5,329,282 + IAI46_24970 0.27 -0.5 5,329,282 + IAI46_24970 0.27 -1.1 5,329,283 - IAI46_24970 0.27 -0.5 5,329,283 - IAI46_24970 0.27 -0.3 5,329,283 - IAI46_24970 0.27 -0.4 5,329,283 - IAI46_24970 0.27 -1.4 5,329,283 - IAI46_24970 0.27 -0.3 5,329,349 + IAI46_24970 0.32 -1.1 5,329,350 - IAI46_24970 0.32 -0.1 5,329,350 - IAI46_24970 0.32 -0.7 5,329,351 + IAI46_24970 0.32 -0.4 5,329,351 + IAI46_24970 0.32 -1.1 5,329,351 + IAI46_24970 0.32 +0.1 5,329,351 + IAI46_24970 0.32 -0.3 5,329,352 - IAI46_24970 0.32 -1.2 5,329,437 - IAI46_24970 0.38 -0.9 5,329,557 - IAI46_24970 0.47 -1.7 5,329,564 + IAI46_24970 0.47 -0.7 5,329,564 + IAI46_24970 0.47 -2.6 5,329,565 - IAI46_24970 0.47 -1.2 5,329,565 - IAI46_24970 0.47 -2.7 5,329,565 - IAI46_24970 0.47 -0.6 5,329,565 - IAI46_24970 0.47 -0.5 5,329,568 + IAI46_24970 0.48 -0.9 5,329,568 + IAI46_24970 0.48 -0.8 5,329,568 + IAI46_24970 0.48 -1.1 5,329,569 - IAI46_24970 0.48 -0.8 5,329,569 - IAI46_24970 0.48 -0.8 5,329,572 + IAI46_24970 0.48 -0.8 5,329,593 + IAI46_24970 0.49 -0.7 5,329,593 + IAI46_24970 0.49 +0.3 5,329,593 + IAI46_24970 0.49 +0.6 5,329,593 + IAI46_24970 0.49 -1.5 5,329,594 - IAI46_24970 0.49 -0.1 5,329,594 - IAI46_24970 0.49 +0.4 5,329,618 + IAI46_24970 0.51 -0.7 5,329,618 + IAI46_24970 0.51 -0.0 5,329,618 + IAI46_24970 0.51 -0.8 5,329,619 - IAI46_24970 0.51 -1.0
Or see this region's nucleotide sequence