Strain Fitness in Serratia liquefaciens MT49 around IAI46_24810

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_24800 and IAI46_24805 are separated by 3 nucleotidesIAI46_24805 and IAI46_24810 are separated by 0 nucleotidesIAI46_24810 and IAI46_24815 are separated by 79 nucleotidesIAI46_24815 and IAI46_24820 are separated by 11 nucleotidesIAI46_24820 and IAI46_24825 are separated by 263 nucleotides IAI46_24800: IAI46_24800 - glycosyltransferase family 2 protein, at 5,294,084 to 5,294,857 _24800 IAI46_24805: IAI46_24805 - pantetheine-phosphate adenylyltransferase, at 5,294,861 to 5,295,346 _24805 IAI46_24810: IAI46_24810 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 5,295,347 to 5,296,156 _24810 IAI46_24815: IAI46_24815 - 50S ribosomal protein L33, at 5,296,236 to 5,296,403 _24815 IAI46_24820: IAI46_24820 - 50S ribosomal protein L28, at 5,296,415 to 5,296,651 _24820 IAI46_24825: IAI46_24825 - DNA repair protein RadC, at 5,296,915 to 5,297,598 _24825 Position (kb) 5295 5296 5297Strain fitness (log2 ratio) -2 -1 0 1at 5294.405 kb on - strand, within IAI46_24800at 5294.800 kb on + strandat 5294.813 kb on + strandat 5295.345 kb on - strandat 5295.345 kb on - strandat 5295.345 kb on - strandat 5295.345 kb on - strandat 5295.447 kb on + strand, within IAI46_24810at 5295.448 kb on - strand, within IAI46_24810at 5295.482 kb on - strand, within IAI46_24810at 5295.626 kb on - strand, within IAI46_24810at 5295.645 kb on + strand, within IAI46_24810at 5295.646 kb on - strand, within IAI46_24810at 5295.646 kb on - strand, within IAI46_24810at 5295.646 kb on - strand, within IAI46_24810at 5295.676 kb on + strand, within IAI46_24810at 5295.732 kb on + strand, within IAI46_24810at 5295.732 kb on + strand, within IAI46_24810at 5295.732 kb on + strand, within IAI46_24810at 5295.733 kb on - strand, within IAI46_24810at 5295.733 kb on - strand, within IAI46_24810at 5295.743 kb on - strand, within IAI46_24810at 5295.841 kb on + strand, within IAI46_24810at 5295.841 kb on + strand, within IAI46_24810at 5295.843 kb on + strand, within IAI46_24810at 5295.843 kb on + strand, within IAI46_24810at 5295.844 kb on - strand, within IAI46_24810at 5295.844 kb on - strand, within IAI46_24810at 5295.953 kb on - strand, within IAI46_24810at 5295.984 kb on + strand, within IAI46_24810at 5295.984 kb on + strand, within IAI46_24810at 5295.984 kb on + strand, within IAI46_24810at 5295.985 kb on - strand, within IAI46_24810at 5295.985 kb on - strand, within IAI46_24810at 5296.107 kb on + strandat 5296.108 kb on - strandat 5296.108 kb on - strandat 5296.189 kb on - strandat 5296.884 kb on - strandat 5296.960 kb on + strandat 5296.960 kb on + strandat 5296.960 kb on + strandat 5296.960 kb on + strandat 5296.960 kb on + strandat 5296.960 kb on + strandat 5296.961 kb on - strandat 5296.963 kb on - strandat 5296.993 kb on + strand, within IAI46_24825at 5297.056 kb on - strand, within IAI46_24825at 5297.071 kb on - strand, within IAI46_24825at 5297.071 kb on - strand, within IAI46_24825at 5297.071 kb on - strand, within IAI46_24825at 5297.071 kb on - strand, within IAI46_24825at 5297.083 kb on - strand, within IAI46_24825at 5297.098 kb on - strand, within IAI46_24825at 5297.134 kb on + strand, within IAI46_24825at 5297.134 kb on + strand, within IAI46_24825at 5297.135 kb on - strand, within IAI46_24825at 5297.135 kb on - strand, within IAI46_24825at 5297.135 kb on - strand, within IAI46_24825at 5297.154 kb on + strand, within IAI46_24825at 5297.155 kb on - strand, within IAI46_24825at 5297.155 kb on - strand, within IAI46_24825at 5297.155 kb on - strand, within IAI46_24825at 5297.155 kb on - strand, within IAI46_24825

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
remove
5,294,405 - IAI46_24800 0.41 +0.1
5,294,800 + +0.4
5,294,813 + +0.4
5,295,345 - -0.1
5,295,345 - +0.8
5,295,345 - +0.1
5,295,345 - +0.3
5,295,447 + IAI46_24810 0.12 -0.6
5,295,448 - IAI46_24810 0.12 -0.3
5,295,482 - IAI46_24810 0.17 -0.4
5,295,626 - IAI46_24810 0.34 -0.3
5,295,645 + IAI46_24810 0.37 -1.2
5,295,646 - IAI46_24810 0.37 -0.4
5,295,646 - IAI46_24810 0.37 -0.1
5,295,646 - IAI46_24810 0.37 +0.9
5,295,676 + IAI46_24810 0.41 +0.9
5,295,732 + IAI46_24810 0.48 -1.0
5,295,732 + IAI46_24810 0.48 -0.2
5,295,732 + IAI46_24810 0.48 -0.6
5,295,733 - IAI46_24810 0.48 +0.0
5,295,733 - IAI46_24810 0.48 +0.1
5,295,743 - IAI46_24810 0.49 -0.8
5,295,841 + IAI46_24810 0.61 -0.0
5,295,841 + IAI46_24810 0.61 -0.2
5,295,843 + IAI46_24810 0.61 +0.2
5,295,843 + IAI46_24810 0.61 +0.3
5,295,844 - IAI46_24810 0.61 +0.5
5,295,844 - IAI46_24810 0.61 -0.7
5,295,953 - IAI46_24810 0.75 -0.4
5,295,984 + IAI46_24810 0.79 -0.6
5,295,984 + IAI46_24810 0.79 +0.7
5,295,984 + IAI46_24810 0.79 -0.1
5,295,985 - IAI46_24810 0.79 -0.9
5,295,985 - IAI46_24810 0.79 +0.2
5,296,107 + -0.1
5,296,108 - +0.4
5,296,108 - -0.9
5,296,189 - +0.4
5,296,884 - +0.1
5,296,960 + -0.9
5,296,960 + +0.1
5,296,960 + -0.8
5,296,960 + +0.4
5,296,960 + +0.1
5,296,960 + -1.8
5,296,961 - -0.2
5,296,963 - +1.1
5,296,993 + IAI46_24825 0.11 -0.4
5,297,056 - IAI46_24825 0.21 -0.4
5,297,071 - IAI46_24825 0.23 +0.1
5,297,071 - IAI46_24825 0.23 +0.2
5,297,071 - IAI46_24825 0.23 -0.1
5,297,071 - IAI46_24825 0.23 -0.1
5,297,083 - IAI46_24825 0.25 -0.4
5,297,098 - IAI46_24825 0.27 +0.0
5,297,134 + IAI46_24825 0.32 -0.6
5,297,134 + IAI46_24825 0.32 +0.4
5,297,135 - IAI46_24825 0.32 -0.6
5,297,135 - IAI46_24825 0.32 +0.5
5,297,135 - IAI46_24825 0.32 -0.4
5,297,154 + IAI46_24825 0.35 -0.4
5,297,155 - IAI46_24825 0.35 -0.9
5,297,155 - IAI46_24825 0.35 +0.3
5,297,155 - IAI46_24825 0.35 -1.4
5,297,155 - IAI46_24825 0.35 +1.2

Or see this region's nucleotide sequence