Strain Fitness in Serratia liquefaciens MT49 around IAI46_24690

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24680 and IAI46_24685 are separated by 63 nucleotidesIAI46_24685 and IAI46_24690 are separated by 106 nucleotidesIAI46_24690 and IAI46_24695 overlap by 1 nucleotidesIAI46_24695 and IAI46_24700 are separated by 59 nucleotidesIAI46_24700 and IAI46_24705 are separated by 28 nucleotides IAI46_24680: IAI46_24680 - DUF3313 domain-containing protein, at 5,269,095 to 5,269,766 _24680 IAI46_24685: IAI46_24685 - serine O-acetyltransferase, at 5,269,830 to 5,270,651 _24685 IAI46_24690: IAI46_24690 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 5,270,758 to 5,271,777 _24690 IAI46_24695: IAI46_24695 - protein-export chaperone SecB, at 5,271,777 to 5,272,247 _24695 IAI46_24700: IAI46_24700 - glutaredoxin 3, at 5,272,307 to 5,272,555 _24700 IAI46_24705: IAI46_24705 - rhodanese-like domain-containing protein, at 5,272,584 to 5,273,018 _24705 Position (kb) 5270 5271 5272Strain fitness (log2 ratio) -2 -1 0 1 2at 5269.765 kb on - strandat 5269.812 kb on - strandat 5269.812 kb on - strandat 5269.831 kb on + strandat 5269.863 kb on - strandat 5269.863 kb on - strandat 5269.863 kb on - strandat 5270.748 kb on - strandat 5270.748 kb on - strandat 5270.752 kb on + strandat 5270.753 kb on - strandat 5270.753 kb on - strandat 5270.754 kb on + strandat 5270.803 kb on + strandat 5270.804 kb on - strandat 5270.834 kb on + strandat 5270.834 kb on + strandat 5270.835 kb on - strandat 5270.846 kb on + strandat 5270.899 kb on + strand, within IAI46_24690at 5270.938 kb on + strand, within IAI46_24690at 5270.938 kb on + strand, within IAI46_24690at 5270.938 kb on + strand, within IAI46_24690at 5270.938 kb on + strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.939 kb on - strand, within IAI46_24690at 5270.940 kb on + strand, within IAI46_24690at 5270.982 kb on + strand, within IAI46_24690at 5270.983 kb on - strand, within IAI46_24690at 5270.983 kb on - strand, within IAI46_24690at 5270.983 kb on - strand, within IAI46_24690at 5270.985 kb on + strand, within IAI46_24690at 5270.986 kb on - strand, within IAI46_24690at 5270.986 kb on - strand, within IAI46_24690at 5271.121 kb on - strand, within IAI46_24690at 5271.141 kb on + strand, within IAI46_24690at 5271.239 kb on + strand, within IAI46_24690at 5271.502 kb on + strand, within IAI46_24690at 5271.502 kb on + strand, within IAI46_24690at 5271.517 kb on + strand, within IAI46_24690at 5271.517 kb on + strand, within IAI46_24690at 5271.517 kb on + strand, within IAI46_24690at 5271.517 kb on + strand, within IAI46_24690at 5271.712 kb on - strandat 5271.714 kb on + strandat 5271.714 kb on + strandat 5271.715 kb on - strandat 5271.718 kb on + strandat 5271.718 kb on + strandat 5271.718 kb on + strandat 5271.718 kb on + strandat 5271.829 kb on + strand, within IAI46_24695at 5271.829 kb on + strand, within IAI46_24695at 5271.830 kb on - strand, within IAI46_24695at 5271.830 kb on - strand, within IAI46_24695at 5271.885 kb on - strand, within IAI46_24695at 5271.947 kb on - strand, within IAI46_24695at 5272.071 kb on + strand, within IAI46_24695at 5272.072 kb on - strand, within IAI46_24695at 5272.081 kb on + strand, within IAI46_24695at 5272.081 kb on + strand, within IAI46_24695at 5272.082 kb on - strand, within IAI46_24695at 5272.082 kb on - strand, within IAI46_24695at 5272.112 kb on + strand, within IAI46_24695at 5272.113 kb on - strand, within IAI46_24695at 5272.116 kb on + strand, within IAI46_24695at 5272.116 kb on + strand, within IAI46_24695at 5272.116 kb on + strand, within IAI46_24695at 5272.117 kb on - strand, within IAI46_24695at 5272.117 kb on - strand, within IAI46_24695at 5272.117 kb on - strand, within IAI46_24695at 5272.127 kb on + strand, within IAI46_24695at 5272.187 kb on + strand, within IAI46_24695at 5272.187 kb on + strand, within IAI46_24695at 5272.187 kb on + strand, within IAI46_24695at 5272.187 kb on + strand, within IAI46_24695at 5272.188 kb on - strand, within IAI46_24695at 5272.188 kb on - strand, within IAI46_24695at 5272.188 kb on - strand, within IAI46_24695at 5272.188 kb on - strand, within IAI46_24695at 5272.189 kb on + strand, within IAI46_24695at 5272.198 kb on + strand, within IAI46_24695at 5272.199 kb on - strand, within IAI46_24695at 5272.199 kb on - strand, within IAI46_24695at 5272.199 kb on - strand, within IAI46_24695at 5272.253 kb on + strandat 5272.253 kb on + strandat 5272.253 kb on + strandat 5272.253 kb on + strandat 5272.254 kb on - strandat 5272.254 kb on - strandat 5272.257 kb on - strandat 5272.257 kb on - strandat 5272.257 kb on - strandat 5272.257 kb on - strandat 5272.257 kb on - strandat 5272.266 kb on + strandat 5272.276 kb on + strandat 5272.277 kb on - strandat 5272.277 kb on - strandat 5272.308 kb on + strandat 5272.348 kb on - strand, within IAI46_24700at 5272.349 kb on + strand, within IAI46_24700at 5272.369 kb on + strand, within IAI46_24700at 5272.536 kb on + strandat 5272.536 kb on + strandat 5272.536 kb on + strandat 5272.536 kb on + strandat 5272.537 kb on - strandat 5272.537 kb on - strandat 5272.537 kb on - strandat 5272.537 kb on - strandat 5272.537 kb on - strandat 5272.537 kb on - strandat 5272.540 kb on + strandat 5272.540 kb on + strandat 5272.540 kb on + strandat 5272.549 kb on + strandat 5272.549 kb on + strandat 5272.560 kb on + strandat 5272.561 kb on - strandat 5272.561 kb on - strandat 5272.561 kb on - strandat 5272.572 kb on + strandat 5272.572 kb on + strandat 5272.573 kb on - strandat 5272.578 kb on - strandat 5272.585 kb on + strandat 5272.585 kb on + strandat 5272.585 kb on + strandat 5272.586 kb on - strandat 5272.586 kb on - strandat 5272.646 kb on + strand, within IAI46_24705at 5272.646 kb on + strand, within IAI46_24705at 5272.646 kb on + strand, within IAI46_24705at 5272.646 kb on + strand, within IAI46_24705

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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5,269,765 - +0.1
5,269,812 - +0.7
5,269,812 - -0.2
5,269,831 + -0.3
5,269,863 - +0.1
5,269,863 - +0.0
5,269,863 - +0.0
5,270,748 - -0.2
5,270,748 - +0.9
5,270,752 + -0.7
5,270,753 - +0.8
5,270,753 - +0.8
5,270,754 + +0.0
5,270,803 + +0.3
5,270,804 - +0.1
5,270,834 + -0.0
5,270,834 + +1.0
5,270,835 - -1.7
5,270,846 + +0.4
5,270,899 + IAI46_24690 0.14 +0.4
5,270,938 + IAI46_24690 0.18 +0.4
5,270,938 + IAI46_24690 0.18 -0.6
5,270,938 + IAI46_24690 0.18 +0.1
5,270,938 + IAI46_24690 0.18 -1.0
5,270,939 - IAI46_24690 0.18 +0.4
5,270,939 - IAI46_24690 0.18 -1.1
5,270,939 - IAI46_24690 0.18 +0.1
5,270,939 - IAI46_24690 0.18 +0.6
5,270,939 - IAI46_24690 0.18 -0.2
5,270,939 - IAI46_24690 0.18 -1.0
5,270,939 - IAI46_24690 0.18 +0.8
5,270,939 - IAI46_24690 0.18 +1.1
5,270,939 - IAI46_24690 0.18 -1.6
5,270,940 + IAI46_24690 0.18 +0.1
5,270,982 + IAI46_24690 0.22 -0.6
5,270,983 - IAI46_24690 0.22 +1.1
5,270,983 - IAI46_24690 0.22 +0.2
5,270,983 - IAI46_24690 0.22 +0.1
5,270,985 + IAI46_24690 0.22 -0.4
5,270,986 - IAI46_24690 0.22 -0.2
5,270,986 - IAI46_24690 0.22 -0.2
5,271,121 - IAI46_24690 0.36 -1.0
5,271,141 + IAI46_24690 0.38 -0.4
5,271,239 + IAI46_24690 0.47 -1.6
5,271,502 + IAI46_24690 0.73 -0.8
5,271,502 + IAI46_24690 0.73 -0.6
5,271,517 + IAI46_24690 0.74 +0.1
5,271,517 + IAI46_24690 0.74 -0.7
5,271,517 + IAI46_24690 0.74 -1.1
5,271,517 + IAI46_24690 0.74 -0.4
5,271,712 - -0.2
5,271,714 + -1.5
5,271,714 + -0.1
5,271,715 - +0.8
5,271,718 + -0.5
5,271,718 + -0.4
5,271,718 + -0.1
5,271,718 + -2.0
5,271,829 + IAI46_24695 0.11 -1.0
5,271,829 + IAI46_24695 0.11 -0.7
5,271,830 - IAI46_24695 0.11 -0.4
5,271,830 - IAI46_24695 0.11 +0.1
5,271,885 - IAI46_24695 0.23 -0.3
5,271,947 - IAI46_24695 0.36 -1.7
5,272,071 + IAI46_24695 0.62 +0.3
5,272,072 - IAI46_24695 0.63 -1.4
5,272,081 + IAI46_24695 0.65 -1.7
5,272,081 + IAI46_24695 0.65 -1.3
5,272,082 - IAI46_24695 0.65 -0.9
5,272,082 - IAI46_24695 0.65 -2.5
5,272,112 + IAI46_24695 0.71 -2.3
5,272,113 - IAI46_24695 0.71 -0.3
5,272,116 + IAI46_24695 0.72 -0.2
5,272,116 + IAI46_24695 0.72 +0.3
5,272,116 + IAI46_24695 0.72 -0.2
5,272,117 - IAI46_24695 0.72 -1.2
5,272,117 - IAI46_24695 0.72 -1.0
5,272,117 - IAI46_24695 0.72 +0.7
5,272,127 + IAI46_24695 0.74 +0.1
5,272,187 + IAI46_24695 0.87 +0.1
5,272,187 + IAI46_24695 0.87 -2.5
5,272,187 + IAI46_24695 0.87 +1.1
5,272,187 + IAI46_24695 0.87 -2.0
5,272,188 - IAI46_24695 0.87 +0.5
5,272,188 - IAI46_24695 0.87 -0.4
5,272,188 - IAI46_24695 0.87 +0.4
5,272,188 - IAI46_24695 0.87 +0.0
5,272,189 + IAI46_24695 0.87 -1.4
5,272,198 + IAI46_24695 0.89 -0.4
5,272,199 - IAI46_24695 0.90 +1.4
5,272,199 - IAI46_24695 0.90 +0.3
5,272,199 - IAI46_24695 0.90 -1.0
5,272,253 + +1.3
5,272,253 + +0.0
5,272,253 + -1.1
5,272,253 + +0.1
5,272,254 - -0.3
5,272,254 - -1.6
5,272,257 - -1.0
5,272,257 - +1.6
5,272,257 - +0.2
5,272,257 - +0.8
5,272,257 - +0.2
5,272,266 + -1.2
5,272,276 + -1.5
5,272,277 - -1.8
5,272,277 - +0.1
5,272,308 + -0.3
5,272,348 - IAI46_24700 0.16 -0.1
5,272,349 + IAI46_24700 0.17 +1.4
5,272,369 + IAI46_24700 0.25 -0.6
5,272,536 + +2.1
5,272,536 + -1.1
5,272,536 + -0.6
5,272,536 + +0.2
5,272,537 - +0.3
5,272,537 - -0.1
5,272,537 - +0.4
5,272,537 - +0.7
5,272,537 - +0.1
5,272,537 - -0.2
5,272,540 + -2.0
5,272,540 + +0.6
5,272,540 + +1.4
5,272,549 + -0.3
5,272,549 + -0.6
5,272,560 + -2.1
5,272,561 - +0.5
5,272,561 - -0.5
5,272,561 - +0.8
5,272,572 + +1.6
5,272,572 + -1.6
5,272,573 - +0.7
5,272,578 - +0.7
5,272,585 + -0.9
5,272,585 + -1.2
5,272,585 + +0.8
5,272,586 - -0.0
5,272,586 - -0.2
5,272,646 + IAI46_24705 0.14 -0.7
5,272,646 + IAI46_24705 0.14 +0.0
5,272,646 + IAI46_24705 0.14 +0.9
5,272,646 + IAI46_24705 0.14 -0.9

Or see this region's nucleotide sequence