Strain Fitness in Serratia liquefaciens MT49 around IAI46_23955

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23945 and IAI46_23950 are separated by 213 nucleotidesIAI46_23950 and IAI46_23955 are separated by 48 nucleotidesIAI46_23955 and IAI46_23960 are separated by 184 nucleotides IAI46_23945: IAI46_23945 - aspartate-semialdehyde dehydrogenase, at 5,098,685 to 5,099,788 _23945 IAI46_23950: IAI46_23950 - YhgN family NAAT transporter, at 5,100,002 to 5,100,595 _23950 IAI46_23955: IAI46_23955 - gluconokinase, at 5,100,644 to 5,101,171 _23955 IAI46_23960: IAI46_23960 - gluconate transporter, at 5,101,356 to 5,102,672 _23960 Position (kb) 5100 5101 5102Strain fitness (log2 ratio) -2 -1 0 1 2at 5099.821 kb on - strandat 5099.821 kb on - strandat 5099.821 kb on - strandat 5099.835 kb on - strandat 5099.880 kb on - strandat 5099.914 kb on + strandat 5099.914 kb on + strandat 5099.914 kb on + strandat 5099.915 kb on - strandat 5099.915 kb on - strandat 5099.915 kb on - strandat 5099.915 kb on - strandat 5099.915 kb on - strandat 5099.915 kb on - strandat 5099.916 kb on + strandat 5099.916 kb on + strandat 5099.916 kb on + strandat 5099.916 kb on + strandat 5099.916 kb on + strandat 5099.916 kb on + strandat 5099.916 kb on + strandat 5099.916 kb on + strandat 5099.917 kb on - strandat 5099.917 kb on - strandat 5099.917 kb on - strandat 5099.917 kb on - strandat 5099.917 kb on - strandat 5099.917 kb on - strandat 5099.917 kb on - strandat 5099.917 kb on - strandat 5099.917 kb on - strandat 5099.917 kb on - strandat 5099.917 kb on - strandat 5099.917 kb on - strandat 5099.917 kb on - strandat 5099.917 kb on - strandat 5099.917 kb on - strandat 5099.918 kb on + strandat 5099.918 kb on + strandat 5099.918 kb on + strandat 5099.918 kb on + strandat 5099.953 kb on - strandat 5099.997 kb on + strandat 5099.997 kb on + strandat 5099.997 kb on + strandat 5099.998 kb on - strandat 5099.998 kb on - strandat 5099.998 kb on - strandat 5099.998 kb on - strandat 5100.039 kb on + strandat 5100.081 kb on + strand, within IAI46_23950at 5100.081 kb on + strand, within IAI46_23950at 5100.160 kb on - strand, within IAI46_23950at 5100.236 kb on - strand, within IAI46_23950at 5100.581 kb on + strandat 5100.581 kb on + strandat 5100.581 kb on + strandat 5100.582 kb on - strandat 5100.594 kb on - strandat 5100.594 kb on - strandat 5100.594 kb on - strandat 5100.600 kb on + strandat 5100.646 kb on - strandat 5100.667 kb on + strandat 5100.667 kb on + strandat 5100.669 kb on + strandat 5100.852 kb on + strand, within IAI46_23955at 5100.853 kb on - strand, within IAI46_23955at 5100.897 kb on + strand, within IAI46_23955at 5100.961 kb on + strand, within IAI46_23955at 5100.962 kb on - strand, within IAI46_23955at 5101.033 kb on + strand, within IAI46_23955at 5101.144 kb on + strandat 5101.149 kb on - strandat 5101.149 kb on - strandat 5101.165 kb on + strandat 5101.166 kb on - strandat 5101.171 kb on + strandat 5101.171 kb on + strandat 5101.172 kb on - strandat 5101.172 kb on - strandat 5101.172 kb on - strandat 5101.199 kb on + strandat 5101.199 kb on + strandat 5101.200 kb on - strandat 5101.354 kb on + strandat 5101.355 kb on - strandat 5101.357 kb on + strandat 5101.357 kb on + strandat 5101.463 kb on - strandat 5101.665 kb on - strand, within IAI46_23960at 5101.728 kb on + strand, within IAI46_23960at 5101.729 kb on - strand, within IAI46_23960at 5101.821 kb on - strand, within IAI46_23960at 5101.922 kb on + strand, within IAI46_23960at 5101.922 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.048 kb on - strand, within IAI46_23960at 5102.095 kb on + strand, within IAI46_23960at 5102.095 kb on + strand, within IAI46_23960at 5102.095 kb on + strand, within IAI46_23960at 5102.096 kb on - strand, within IAI46_23960at 5102.096 kb on - strand, within IAI46_23960at 5102.096 kb on - strand, within IAI46_23960at 5102.144 kb on - strand, within IAI46_23960at 5102.156 kb on + strand, within IAI46_23960at 5102.156 kb on + strand, within IAI46_23960at 5102.157 kb on - strand, within IAI46_23960

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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5,099,821 - -0.9
5,099,821 - +0.0
5,099,821 - -0.8
5,099,835 - +0.1
5,099,880 - -0.6
5,099,914 + +0.4
5,099,914 + +0.4
5,099,914 + -0.0
5,099,915 - +0.9
5,099,915 - +0.4
5,099,915 - +1.1
5,099,915 - +0.3
5,099,915 - -1.2
5,099,915 - -0.1
5,099,916 + -1.2
5,099,916 + +1.8
5,099,916 + +0.7
5,099,916 + +0.2
5,099,916 + +0.1
5,099,916 + -0.4
5,099,916 + +0.0
5,099,916 + -0.3
5,099,917 - +0.2
5,099,917 - -1.0
5,099,917 - +0.1
5,099,917 - +1.1
5,099,917 - -0.7
5,099,917 - +0.5
5,099,917 - +1.3
5,099,917 - -0.1
5,099,917 - +0.4
5,099,917 - +0.4
5,099,917 - +0.4
5,099,917 - +1.1
5,099,917 - -0.1
5,099,917 - -0.8
5,099,917 - -0.5
5,099,918 + +1.1
5,099,918 + +0.2
5,099,918 + +2.3
5,099,918 + -0.3
5,099,953 - +0.7
5,099,997 + +0.3
5,099,997 + +1.2
5,099,997 + +0.0
5,099,998 - -0.6
5,099,998 - +0.6
5,099,998 - +0.2
5,099,998 - -0.8
5,100,039 + -0.4
5,100,081 + IAI46_23950 0.13 +0.3
5,100,081 + IAI46_23950 0.13 -0.7
5,100,160 - IAI46_23950 0.27 -1.3
5,100,236 - IAI46_23950 0.39 -0.1
5,100,581 + +0.3
5,100,581 + +0.3
5,100,581 + -2.2
5,100,582 - +0.4
5,100,594 - +0.2
5,100,594 - +0.5
5,100,594 - +0.3
5,100,600 + +0.4
5,100,646 - -1.5
5,100,667 + +0.5
5,100,667 + +0.3
5,100,669 + -0.1
5,100,852 + IAI46_23955 0.39 +0.2
5,100,853 - IAI46_23955 0.40 +0.1
5,100,897 + IAI46_23955 0.48 -1.3
5,100,961 + IAI46_23955 0.60 +0.1
5,100,962 - IAI46_23955 0.60 -0.5
5,101,033 + IAI46_23955 0.74 +0.2
5,101,144 + +0.6
5,101,149 - +0.7
5,101,149 - -0.3
5,101,165 + -0.7
5,101,166 - +0.1
5,101,171 + +0.4
5,101,171 + +0.2
5,101,172 - -0.7
5,101,172 - -0.0
5,101,172 - +0.5
5,101,199 + +0.5
5,101,199 + +0.7
5,101,200 - +0.3
5,101,354 + +0.8
5,101,355 - -0.6
5,101,357 + -1.4
5,101,357 + +0.7
5,101,463 - -0.3
5,101,665 - IAI46_23960 0.23 -0.9
5,101,728 + IAI46_23960 0.28 -1.6
5,101,729 - IAI46_23960 0.28 +0.3
5,101,821 - IAI46_23960 0.35 -1.0
5,101,922 + IAI46_23960 0.43 +0.2
5,101,922 + IAI46_23960 0.43 +0.2
5,102,047 + IAI46_23960 0.52 -0.2
5,102,047 + IAI46_23960 0.52 -0.3
5,102,047 + IAI46_23960 0.52 -0.8
5,102,047 + IAI46_23960 0.52 +0.3
5,102,047 + IAI46_23960 0.52 +0.5
5,102,047 + IAI46_23960 0.52 -0.7
5,102,047 + IAI46_23960 0.52 +0.6
5,102,048 - IAI46_23960 0.53 +1.0
5,102,095 + IAI46_23960 0.56 +0.8
5,102,095 + IAI46_23960 0.56 +0.1
5,102,095 + IAI46_23960 0.56 +0.6
5,102,096 - IAI46_23960 0.56 +0.2
5,102,096 - IAI46_23960 0.56 +0.3
5,102,096 - IAI46_23960 0.56 +0.2
5,102,144 - IAI46_23960 0.60 -0.2
5,102,156 + IAI46_23960 0.61 +0.0
5,102,156 + IAI46_23960 0.61 +0.6
5,102,157 - IAI46_23960 0.61 -0.3

Or see this region's nucleotide sequence