Strain Fitness in Serratia liquefaciens MT49 around IAI46_18985

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18980 and IAI46_18985 are separated by 10 nucleotidesIAI46_18985 and IAI46_18990 overlap by 1 nucleotides IAI46_18980: IAI46_18980 - multidrug efflux RND transporter permease subunit MdtC, at 4,003,048 to 4,006,128 _18980 IAI46_18985: IAI46_18985 - MFS transporter, at 4,006,139 to 4,007,569 _18985 IAI46_18990: IAI46_18990 - two-component system sensor histidine kinase BaeS, at 4,007,569 to 4,008,951 _18990 Position (kb) 4006 4007 4008Strain fitness (log2 ratio) -2 -1 0 1 2at 4005.199 kb on - strand, within IAI46_18980at 4005.231 kb on + strand, within IAI46_18980at 4005.261 kb on + strand, within IAI46_18980at 4005.262 kb on - strand, within IAI46_18980at 4005.265 kb on + strand, within IAI46_18980at 4005.265 kb on + strand, within IAI46_18980at 4005.265 kb on + strand, within IAI46_18980at 4005.265 kb on + strand, within IAI46_18980at 4005.266 kb on - strand, within IAI46_18980at 4005.266 kb on - strand, within IAI46_18980at 4005.266 kb on - strand, within IAI46_18980at 4005.266 kb on - strand, within IAI46_18980at 4005.313 kb on + strand, within IAI46_18980at 4005.385 kb on + strand, within IAI46_18980at 4005.466 kb on - strand, within IAI46_18980at 4005.631 kb on - strand, within IAI46_18980at 4005.631 kb on - strand, within IAI46_18980at 4005.638 kb on - strand, within IAI46_18980at 4005.638 kb on - strand, within IAI46_18980at 4005.638 kb on - strand, within IAI46_18980at 4005.638 kb on - strand, within IAI46_18980at 4005.638 kb on - strand, within IAI46_18980at 4005.638 kb on - strand, within IAI46_18980at 4005.638 kb on - strand, within IAI46_18980at 4005.638 kb on - strand, within IAI46_18980at 4005.640 kb on - strand, within IAI46_18980at 4005.667 kb on + strand, within IAI46_18980at 4005.667 kb on + strand, within IAI46_18980at 4005.668 kb on - strand, within IAI46_18980at 4005.777 kb on + strand, within IAI46_18980at 4005.778 kb on - strand, within IAI46_18980at 4006.042 kb on + strandat 4006.042 kb on + strandat 4006.042 kb on + strandat 4006.043 kb on - strandat 4006.060 kb on + strandat 4006.060 kb on + strandat 4006.061 kb on - strandat 4006.146 kb on + strandat 4006.222 kb on + strandat 4006.301 kb on + strand, within IAI46_18985at 4006.301 kb on + strand, within IAI46_18985at 4006.301 kb on + strand, within IAI46_18985at 4006.302 kb on - strand, within IAI46_18985at 4006.302 kb on - strand, within IAI46_18985at 4006.302 kb on - strand, within IAI46_18985at 4006.302 kb on - strand, within IAI46_18985at 4006.488 kb on + strand, within IAI46_18985at 4006.535 kb on + strand, within IAI46_18985at 4006.535 kb on + strand, within IAI46_18985at 4006.535 kb on + strand, within IAI46_18985at 4006.535 kb on + strand, within IAI46_18985at 4006.536 kb on - strand, within IAI46_18985at 4006.537 kb on + strand, within IAI46_18985at 4006.538 kb on - strand, within IAI46_18985at 4006.538 kb on - strand, within IAI46_18985at 4006.538 kb on - strand, within IAI46_18985at 4006.538 kb on - strand, within IAI46_18985at 4006.538 kb on - strand, within IAI46_18985at 4006.538 kb on - strand, within IAI46_18985at 4006.620 kb on - strand, within IAI46_18985at 4006.703 kb on + strand, within IAI46_18985at 4006.742 kb on - strand, within IAI46_18985at 4006.929 kb on - strand, within IAI46_18985at 4006.930 kb on + strand, within IAI46_18985at 4006.930 kb on + strand, within IAI46_18985at 4006.987 kb on + strand, within IAI46_18985at 4006.988 kb on - strand, within IAI46_18985at 4007.002 kb on + strand, within IAI46_18985at 4007.217 kb on + strand, within IAI46_18985at 4007.217 kb on + strand, within IAI46_18985at 4007.218 kb on - strand, within IAI46_18985at 4007.218 kb on - strand, within IAI46_18985at 4007.218 kb on - strand, within IAI46_18985at 4007.218 kb on - strand, within IAI46_18985at 4007.371 kb on + strand, within IAI46_18985at 4007.447 kb on + strandat 4007.447 kb on + strandat 4007.447 kb on + strandat 4007.448 kb on - strandat 4007.524 kb on + strandat 4007.567 kb on + strandat 4007.577 kb on - strandat 4007.634 kb on + strandat 4007.634 kb on + strandat 4007.634 kb on + strandat 4007.743 kb on + strand, within IAI46_18990at 4007.743 kb on + strand, within IAI46_18990at 4007.744 kb on - strand, within IAI46_18990at 4007.744 kb on - strand, within IAI46_18990at 4007.778 kb on + strand, within IAI46_18990at 4007.778 kb on + strand, within IAI46_18990at 4007.795 kb on - strand, within IAI46_18990at 4007.891 kb on - strand, within IAI46_18990at 4007.891 kb on - strand, within IAI46_18990at 4007.983 kb on - strand, within IAI46_18990at 4007.983 kb on - strand, within IAI46_18990at 4007.983 kb on - strand, within IAI46_18990at 4007.994 kb on - strand, within IAI46_18990at 4008.012 kb on + strand, within IAI46_18990at 4008.244 kb on - strand, within IAI46_18990at 4008.359 kb on + strand, within IAI46_18990at 4008.359 kb on + strand, within IAI46_18990at 4008.360 kb on - strand, within IAI46_18990at 4008.477 kb on + strand, within IAI46_18990at 4008.478 kb on - strand, within IAI46_18990

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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4,005,199 - IAI46_18980 0.70 -0.9
4,005,231 + IAI46_18980 0.71 +0.3
4,005,261 + IAI46_18980 0.72 +0.5
4,005,262 - IAI46_18980 0.72 +0.9
4,005,265 + IAI46_18980 0.72 -0.7
4,005,265 + IAI46_18980 0.72 -1.1
4,005,265 + IAI46_18980 0.72 -0.6
4,005,265 + IAI46_18980 0.72 -0.2
4,005,266 - IAI46_18980 0.72 -0.5
4,005,266 - IAI46_18980 0.72 +0.6
4,005,266 - IAI46_18980 0.72 +0.2
4,005,266 - IAI46_18980 0.72 +0.2
4,005,313 + IAI46_18980 0.74 -0.1
4,005,385 + IAI46_18980 0.76 -0.4
4,005,466 - IAI46_18980 0.78 -0.2
4,005,631 - IAI46_18980 0.84 +1.1
4,005,631 - IAI46_18980 0.84 -1.0
4,005,638 - IAI46_18980 0.84 +0.3
4,005,638 - IAI46_18980 0.84 +1.3
4,005,638 - IAI46_18980 0.84 +0.8
4,005,638 - IAI46_18980 0.84 +0.8
4,005,638 - IAI46_18980 0.84 +0.7
4,005,638 - IAI46_18980 0.84 -0.0
4,005,638 - IAI46_18980 0.84 +0.7
4,005,638 - IAI46_18980 0.84 -0.5
4,005,640 - IAI46_18980 0.84 +0.4
4,005,667 + IAI46_18980 0.85 -2.2
4,005,667 + IAI46_18980 0.85 +0.1
4,005,668 - IAI46_18980 0.85 +0.7
4,005,777 + IAI46_18980 0.89 -0.8
4,005,778 - IAI46_18980 0.89 -0.2
4,006,042 + -0.2
4,006,042 + +0.1
4,006,042 + +0.2
4,006,043 - +0.7
4,006,060 + -0.2
4,006,060 + +0.1
4,006,061 - +0.6
4,006,146 + +1.6
4,006,222 + +0.4
4,006,301 + IAI46_18985 0.11 +0.3
4,006,301 + IAI46_18985 0.11 +0.4
4,006,301 + IAI46_18985 0.11 +0.8
4,006,302 - IAI46_18985 0.11 +0.6
4,006,302 - IAI46_18985 0.11 +0.9
4,006,302 - IAI46_18985 0.11 -0.3
4,006,302 - IAI46_18985 0.11 -0.5
4,006,488 + IAI46_18985 0.24 -0.7
4,006,535 + IAI46_18985 0.28 +0.8
4,006,535 + IAI46_18985 0.28 -0.0
4,006,535 + IAI46_18985 0.28 +0.5
4,006,535 + IAI46_18985 0.28 +0.4
4,006,536 - IAI46_18985 0.28 +1.0
4,006,537 + IAI46_18985 0.28 +0.8
4,006,538 - IAI46_18985 0.28 +0.7
4,006,538 - IAI46_18985 0.28 +0.2
4,006,538 - IAI46_18985 0.28 +0.6
4,006,538 - IAI46_18985 0.28 -0.2
4,006,538 - IAI46_18985 0.28 +0.2
4,006,538 - IAI46_18985 0.28 -0.2
4,006,620 - IAI46_18985 0.34 -0.3
4,006,703 + IAI46_18985 0.39 +0.3
4,006,742 - IAI46_18985 0.42 -0.5
4,006,929 - IAI46_18985 0.55 +0.1
4,006,930 + IAI46_18985 0.55 +0.2
4,006,930 + IAI46_18985 0.55 +0.2
4,006,987 + IAI46_18985 0.59 -0.2
4,006,988 - IAI46_18985 0.59 -1.5
4,007,002 + IAI46_18985 0.60 +1.1
4,007,217 + IAI46_18985 0.75 +0.1
4,007,217 + IAI46_18985 0.75 -1.3
4,007,218 - IAI46_18985 0.75 -0.7
4,007,218 - IAI46_18985 0.75 -0.4
4,007,218 - IAI46_18985 0.75 +1.3
4,007,218 - IAI46_18985 0.75 +0.0
4,007,371 + IAI46_18985 0.86 +1.4
4,007,447 + -0.2
4,007,447 + -0.1
4,007,447 + +0.2
4,007,448 - -0.6
4,007,524 + -0.3
4,007,567 + -1.1
4,007,577 - +0.5
4,007,634 + +0.6
4,007,634 + -0.1
4,007,634 + -0.3
4,007,743 + IAI46_18990 0.13 +0.1
4,007,743 + IAI46_18990 0.13 +0.7
4,007,744 - IAI46_18990 0.13 -0.1
4,007,744 - IAI46_18990 0.13 -0.7
4,007,778 + IAI46_18990 0.15 -0.2
4,007,778 + IAI46_18990 0.15 -0.0
4,007,795 - IAI46_18990 0.16 -0.4
4,007,891 - IAI46_18990 0.23 -0.9
4,007,891 - IAI46_18990 0.23 -0.3
4,007,983 - IAI46_18990 0.30 -0.2
4,007,983 - IAI46_18990 0.30 +0.0
4,007,983 - IAI46_18990 0.30 -0.2
4,007,994 - IAI46_18990 0.31 -0.8
4,008,012 + IAI46_18990 0.32 -0.4
4,008,244 - IAI46_18990 0.49 -0.1
4,008,359 + IAI46_18990 0.57 -1.7
4,008,359 + IAI46_18990 0.57 +1.9
4,008,360 - IAI46_18990 0.57 +0.7
4,008,477 + IAI46_18990 0.66 -0.9
4,008,478 - IAI46_18990 0.66 -0.3

Or see this region's nucleotide sequence