Strain Fitness in Serratia liquefaciens MT49 around IAI46_18835

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18830 and IAI46_18835 are separated by 146 nucleotidesIAI46_18835 and IAI46_18840 are separated by 385 nucleotides IAI46_18830: IAI46_18830 - FAD-dependent oxidoreductase, at 3,964,553 to 3,965,761 _18830 IAI46_18835: IAI46_18835 - Rrf2 family transcriptional regulator, at 3,965,908 to 3,966,450 _18835 IAI46_18840: IAI46_18840 - M48 family metallopeptidase, at 3,966,836 to 3,968,305 _18840 Position (kb) 3965 3966 3967Strain fitness (log2 ratio) -2 -1 0 1at 3964.945 kb on + strand, within IAI46_18830at 3964.946 kb on - strand, within IAI46_18830at 3964.985 kb on + strand, within IAI46_18830at 3964.986 kb on - strand, within IAI46_18830at 3964.986 kb on - strand, within IAI46_18830at 3965.232 kb on - strand, within IAI46_18830at 3965.232 kb on - strand, within IAI46_18830at 3965.380 kb on + strand, within IAI46_18830at 3965.380 kb on + strand, within IAI46_18830at 3965.380 kb on + strand, within IAI46_18830at 3965.381 kb on - strand, within IAI46_18830at 3965.381 kb on - strand, within IAI46_18830at 3965.517 kb on - strand, within IAI46_18830at 3965.950 kb on - strandat 3965.980 kb on - strand, within IAI46_18835at 3966.436 kb on - strandat 3966.436 kb on - strandat 3966.436 kb on - strandat 3966.444 kb on - strandat 3966.444 kb on - strandat 3966.444 kb on - strandat 3966.444 kb on - strandat 3966.451 kb on - strandat 3966.491 kb on + strandat 3966.493 kb on + strandat 3966.643 kb on + strandat 3966.682 kb on + strandat 3966.690 kb on + strandat 3966.690 kb on + strandat 3966.690 kb on + strandat 3966.690 kb on + strandat 3966.690 kb on + strandat 3966.691 kb on - strandat 3966.691 kb on - strandat 3966.764 kb on + strandat 3966.765 kb on - strandat 3966.804 kb on + strandat 3966.805 kb on - strandat 3966.805 kb on - strandat 3966.805 kb on - strandat 3966.805 kb on - strandat 3966.814 kb on + strandat 3966.814 kb on + strandat 3966.814 kb on + strandat 3966.815 kb on - strandat 3966.815 kb on - strandat 3966.815 kb on - strandat 3966.819 kb on - strandat 3966.819 kb on - strandat 3966.835 kb on + strandat 3966.835 kb on + strandat 3966.835 kb on + strandat 3966.836 kb on - strandat 3966.836 kb on - strandat 3966.836 kb on - strandat 3966.836 kb on - strandat 3966.836 kb on - strandat 3966.871 kb on - strandat 3966.871 kb on - strandat 3966.913 kb on - strandat 3966.973 kb on + strandat 3967.050 kb on + strand, within IAI46_18840at 3967.061 kb on + strand, within IAI46_18840at 3967.061 kb on + strand, within IAI46_18840at 3967.061 kb on + strand, within IAI46_18840at 3967.062 kb on - strand, within IAI46_18840at 3967.064 kb on - strand, within IAI46_18840at 3967.064 kb on - strand, within IAI46_18840at 3967.064 kb on - strand, within IAI46_18840at 3967.064 kb on - strand, within IAI46_18840at 3967.066 kb on + strand, within IAI46_18840at 3967.128 kb on - strand, within IAI46_18840at 3967.427 kb on - strand, within IAI46_18840

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,964,945 + IAI46_18830 0.32 -0.1
3,964,946 - IAI46_18830 0.33 +0.3
3,964,985 + IAI46_18830 0.36 -0.3
3,964,986 - IAI46_18830 0.36 -0.4
3,964,986 - IAI46_18830 0.36 +1.0
3,965,232 - IAI46_18830 0.56 -0.3
3,965,232 - IAI46_18830 0.56 -0.2
3,965,380 + IAI46_18830 0.68 -0.7
3,965,380 + IAI46_18830 0.68 -1.3
3,965,380 + IAI46_18830 0.68 -0.2
3,965,381 - IAI46_18830 0.68 -0.7
3,965,381 - IAI46_18830 0.68 -0.3
3,965,517 - IAI46_18830 0.80 -1.0
3,965,950 - +0.0
3,965,980 - IAI46_18835 0.13 -0.1
3,966,436 - -0.5
3,966,436 - +1.1
3,966,436 - +0.5
3,966,444 - -0.3
3,966,444 - +0.6
3,966,444 - +0.7
3,966,444 - +1.0
3,966,451 - +0.1
3,966,491 + +0.3
3,966,493 + +0.3
3,966,643 + +0.2
3,966,682 + -1.3
3,966,690 + -0.1
3,966,690 + +0.1
3,966,690 + +0.5
3,966,690 + -0.2
3,966,690 + +0.7
3,966,691 - -0.5
3,966,691 - +0.0
3,966,764 + -0.5
3,966,765 - +1.6
3,966,804 + +0.1
3,966,805 - -0.1
3,966,805 - +0.5
3,966,805 - +1.4
3,966,805 - +1.0
3,966,814 + -0.7
3,966,814 + +0.5
3,966,814 + -0.7
3,966,815 - -0.1
3,966,815 - -0.7
3,966,815 - +0.9
3,966,819 - +0.3
3,966,819 - +0.3
3,966,835 + -0.2
3,966,835 + +0.9
3,966,835 + +0.1
3,966,836 - +0.6
3,966,836 - +0.3
3,966,836 - -0.4
3,966,836 - -0.6
3,966,836 - -0.2
3,966,871 - +0.2
3,966,871 - +0.7
3,966,913 - -1.0
3,966,973 + +1.2
3,967,050 + IAI46_18840 0.15 -0.2
3,967,061 + IAI46_18840 0.15 +0.1
3,967,061 + IAI46_18840 0.15 -1.8
3,967,061 + IAI46_18840 0.15 +0.6
3,967,062 - IAI46_18840 0.15 -1.9
3,967,064 - IAI46_18840 0.16 -0.1
3,967,064 - IAI46_18840 0.16 +1.6
3,967,064 - IAI46_18840 0.16 +0.3
3,967,064 - IAI46_18840 0.16 -0.3
3,967,066 + IAI46_18840 0.16 -0.4
3,967,128 - IAI46_18840 0.20 -0.4
3,967,427 - IAI46_18840 0.40 -1.8

Or see this region's nucleotide sequence