Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_18025 and IAI46_18030 are separated by 62 nucleotides IAI46_18030 and IAI46_18035 are separated by 170 nucleotides IAI46_18035 and IAI46_18040 are separated by 66 nucleotides
IAI46_18025: IAI46_18025 - chorismate synthase, at 3,799,226 to 3,800,311
_18025
IAI46_18030: IAI46_18030 - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 3,800,374 to 3,801,306
_18030
IAI46_18035: IAI46_18035 - endonuclease SmrB, at 3,801,477 to 3,802,007
_18035
IAI46_18040: IAI46_18040 - phosphohistidine phosphatase SixA, at 3,802,074 to 3,802,556
_18040
Position (kb)
3800
3801
3802 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3799.417 kb on + strand, within IAI46_18025 at 3799.980 kb on + strand, within IAI46_18025 at 3799.986 kb on + strand, within IAI46_18025 at 3799.986 kb on + strand, within IAI46_18025 at 3800.087 kb on + strand, within IAI46_18025 at 3800.114 kb on - strand, within IAI46_18025 at 3800.117 kb on + strand, within IAI46_18025 at 3800.117 kb on + strand, within IAI46_18025 at 3800.118 kb on - strand, within IAI46_18025 at 3800.118 kb on - strand, within IAI46_18025 at 3800.118 kb on - strand, within IAI46_18025 at 3800.118 kb on - strand, within IAI46_18025 at 3800.146 kb on + strand, within IAI46_18025 at 3800.148 kb on + strand, within IAI46_18025 at 3800.223 kb on - strand at 3800.236 kb on + strand at 3800.237 kb on - strand at 3800.323 kb on - strand at 3800.328 kb on + strand at 3800.333 kb on - strand at 3800.333 kb on - strand at 3800.336 kb on - strand at 3800.376 kb on - strand at 3800.376 kb on - strand at 3800.490 kb on - strand, within IAI46_18030 at 3800.506 kb on + strand, within IAI46_18030 at 3800.507 kb on - strand, within IAI46_18030 at 3800.507 kb on - strand, within IAI46_18030 at 3800.507 kb on - strand, within IAI46_18030 at 3800.518 kb on - strand, within IAI46_18030 at 3800.782 kb on - strand, within IAI46_18030 at 3800.852 kb on + strand, within IAI46_18030 at 3800.852 kb on + strand, within IAI46_18030 at 3800.886 kb on + strand, within IAI46_18030 at 3800.901 kb on + strand, within IAI46_18030 at 3800.994 kb on - strand, within IAI46_18030 at 3801.022 kb on - strand, within IAI46_18030 at 3801.032 kb on + strand, within IAI46_18030 at 3801.033 kb on - strand, within IAI46_18030 at 3801.033 kb on - strand, within IAI46_18030 at 3801.033 kb on - strand, within IAI46_18030 at 3801.033 kb on - strand, within IAI46_18030 at 3801.132 kb on + strand, within IAI46_18030 at 3801.206 kb on + strand, within IAI46_18030 at 3801.206 kb on + strand, within IAI46_18030 at 3801.207 kb on - strand, within IAI46_18030 at 3801.207 kb on - strand, within IAI46_18030 at 3801.207 kb on - strand, within IAI46_18030 at 3801.209 kb on + strand, within IAI46_18030 at 3801.209 kb on + strand, within IAI46_18030 at 3801.209 kb on + strand, within IAI46_18030 at 3801.210 kb on - strand, within IAI46_18030 at 3801.210 kb on - strand, within IAI46_18030 at 3801.210 kb on - strand, within IAI46_18030 at 3801.210 kb on - strand, within IAI46_18030 at 3801.210 kb on - strand, within IAI46_18030 at 3801.210 kb on - strand, within IAI46_18030 at 3801.210 kb on - strand, within IAI46_18030 at 3801.210 kb on - strand, within IAI46_18030 at 3801.252 kb on + strand at 3801.252 kb on + strand at 3801.252 kb on + strand at 3801.253 kb on - strand at 3801.253 kb on - strand at 3801.253 kb on - strand at 3801.348 kb on + strand at 3801.349 kb on - strand at 3801.349 kb on - strand at 3801.441 kb on - strand at 3801.533 kb on - strand, within IAI46_18035 at 3801.533 kb on - strand, within IAI46_18035 at 3801.536 kb on - strand, within IAI46_18035 at 3801.711 kb on + strand, within IAI46_18035 at 3801.982 kb on + strand at 3801.983 kb on - strand at 3802.077 kb on + strand at 3802.082 kb on + strand at 3802.127 kb on - strand, within IAI46_18040 at 3802.231 kb on - strand, within IAI46_18040 at 3802.285 kb on + strand, within IAI46_18040 at 3802.286 kb on - strand, within IAI46_18040 at 3802.286 kb on - strand, within IAI46_18040
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic remove 3,799,417 + IAI46_18025 0.18 +1.1 3,799,980 + IAI46_18025 0.69 +0.2 3,799,986 + IAI46_18025 0.70 +0.2 3,799,986 + IAI46_18025 0.70 +0.5 3,800,087 + IAI46_18025 0.79 +1.1 3,800,114 - IAI46_18025 0.82 +0.1 3,800,117 + IAI46_18025 0.82 -0.4 3,800,117 + IAI46_18025 0.82 -0.9 3,800,118 - IAI46_18025 0.82 +1.3 3,800,118 - IAI46_18025 0.82 +0.0 3,800,118 - IAI46_18025 0.82 -0.8 3,800,118 - IAI46_18025 0.82 -2.0 3,800,146 + IAI46_18025 0.85 +1.0 3,800,148 + IAI46_18025 0.85 +0.8 3,800,223 - +0.2 3,800,236 + +1.4 3,800,237 - -0.7 3,800,323 - +0.6 3,800,328 + -0.2 3,800,333 - +0.1 3,800,333 - -0.4 3,800,336 - +0.3 3,800,376 - +1.0 3,800,376 - +0.1 3,800,490 - IAI46_18030 0.12 -0.8 3,800,506 + IAI46_18030 0.14 +0.2 3,800,507 - IAI46_18030 0.14 -0.7 3,800,507 - IAI46_18030 0.14 +0.4 3,800,507 - IAI46_18030 0.14 -0.2 3,800,518 - IAI46_18030 0.15 -0.4 3,800,782 - IAI46_18030 0.44 +1.2 3,800,852 + IAI46_18030 0.51 -1.8 3,800,852 + IAI46_18030 0.51 +0.6 3,800,886 + IAI46_18030 0.55 +0.6 3,800,901 + IAI46_18030 0.56 +0.9 3,800,994 - IAI46_18030 0.66 +0.3 3,801,022 - IAI46_18030 0.69 +0.6 3,801,032 + IAI46_18030 0.71 +0.2 3,801,033 - IAI46_18030 0.71 +0.8 3,801,033 - IAI46_18030 0.71 +2.1 3,801,033 - IAI46_18030 0.71 +0.4 3,801,033 - IAI46_18030 0.71 -0.5 3,801,132 + IAI46_18030 0.81 -0.2 3,801,206 + IAI46_18030 0.89 -2.8 3,801,206 + IAI46_18030 0.89 -1.0 3,801,207 - IAI46_18030 0.89 +0.7 3,801,207 - IAI46_18030 0.89 +0.3 3,801,207 - IAI46_18030 0.89 +0.1 3,801,209 + IAI46_18030 0.89 +2.1 3,801,209 + IAI46_18030 0.89 +1.0 3,801,209 + IAI46_18030 0.89 -0.7 3,801,210 - IAI46_18030 0.90 -0.6 3,801,210 - IAI46_18030 0.90 +0.2 3,801,210 - IAI46_18030 0.90 +0.5 3,801,210 - IAI46_18030 0.90 +2.1 3,801,210 - IAI46_18030 0.90 +0.7 3,801,210 - IAI46_18030 0.90 +0.0 3,801,210 - IAI46_18030 0.90 +0.1 3,801,210 - IAI46_18030 0.90 -0.5 3,801,252 + +0.1 3,801,252 + +0.6 3,801,252 + -0.9 3,801,253 - +0.3 3,801,253 - -0.7 3,801,253 - -0.3 3,801,348 + +0.4 3,801,349 - -0.4 3,801,349 - +0.5 3,801,441 - +0.8 3,801,533 - IAI46_18035 0.11 +1.9 3,801,533 - IAI46_18035 0.11 -0.7 3,801,536 - IAI46_18035 0.11 +0.3 3,801,711 + IAI46_18035 0.44 -0.0 3,801,982 + +0.0 3,801,983 - -0.6 3,802,077 + +0.9 3,802,082 + +0.9 3,802,127 - IAI46_18040 0.11 -1.1 3,802,231 - IAI46_18040 0.33 +0.0 3,802,285 + IAI46_18040 0.44 -0.7 3,802,286 - IAI46_18040 0.44 -0.7 3,802,286 - IAI46_18040 0.44 -0.7
Or see this region's nucleotide sequence