Strain Fitness in Serratia liquefaciens MT49 around IAI46_17780

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17770 and IAI46_17775 are separated by 104 nucleotidesIAI46_17775 and IAI46_17780 are separated by 28 nucleotidesIAI46_17780 and IAI46_17785 are separated by 44 nucleotidesIAI46_17785 and IAI46_17790 are separated by 18 nucleotides IAI46_17770: IAI46_17770 - GSH-dependent disulfide bond oxidoreductase, at 3,746,817 to 3,747,446 _17770 IAI46_17775: IAI46_17775 - dihydroneopterin triphosphate 2'-epimerase, at 3,747,551 to 3,747,922 _17775 IAI46_17780: IAI46_17780 - TIGR01777 family protein, at 3,747,951 to 3,748,865 _17780 IAI46_17785: IAI46_17785 - histidine ABC transporter ATP-binding protein HisP, at 3,748,910 to 3,749,683 _17785 IAI46_17790: IAI46_17790 - ABC transporter permease, at 3,749,702 to 3,750,406 _17790 Position (kb) 3747 3748 3749Strain fitness (log2 ratio) -2 -1 0 1 2at 3747.049 kb on - strand, within IAI46_17770at 3747.109 kb on + strand, within IAI46_17770at 3747.109 kb on + strand, within IAI46_17770at 3747.170 kb on + strand, within IAI46_17770at 3747.171 kb on - strand, within IAI46_17770at 3747.214 kb on - strand, within IAI46_17770at 3747.274 kb on - strand, within IAI46_17770at 3747.291 kb on + strand, within IAI46_17770at 3747.291 kb on + strand, within IAI46_17770at 3747.292 kb on - strand, within IAI46_17770at 3747.315 kb on + strand, within IAI46_17770at 3747.315 kb on + strand, within IAI46_17770at 3747.482 kb on - strandat 3747.501 kb on - strandat 3747.511 kb on + strandat 3747.605 kb on - strand, within IAI46_17775at 3747.617 kb on - strand, within IAI46_17775at 3747.663 kb on + strand, within IAI46_17775at 3747.674 kb on + strand, within IAI46_17775at 3747.725 kb on + strand, within IAI46_17775at 3747.767 kb on - strand, within IAI46_17775at 3747.839 kb on + strand, within IAI46_17775at 3747.849 kb on + strand, within IAI46_17775at 3747.849 kb on + strand, within IAI46_17775at 3747.849 kb on + strand, within IAI46_17775at 3747.855 kb on + strand, within IAI46_17775at 3747.855 kb on + strand, within IAI46_17775at 3747.855 kb on + strand, within IAI46_17775at 3747.856 kb on - strand, within IAI46_17775at 3747.856 kb on - strand, within IAI46_17775at 3747.859 kb on + strand, within IAI46_17775at 3747.860 kb on - strand, within IAI46_17775at 3747.860 kb on - strand, within IAI46_17775at 3747.860 kb on - strand, within IAI46_17775at 3747.864 kb on + strand, within IAI46_17775at 3747.865 kb on - strand, within IAI46_17775at 3747.985 kb on + strandat 3748.302 kb on + strand, within IAI46_17780at 3748.445 kb on - strand, within IAI46_17780at 3748.445 kb on - strand, within IAI46_17780at 3748.575 kb on - strand, within IAI46_17780at 3748.578 kb on + strand, within IAI46_17780at 3748.579 kb on - strand, within IAI46_17780at 3748.579 kb on - strand, within IAI46_17780at 3748.616 kb on + strand, within IAI46_17780at 3748.630 kb on - strand, within IAI46_17780at 3748.873 kb on + strandat 3748.874 kb on - strandat 3748.874 kb on - strandat 3748.874 kb on - strandat 3748.875 kb on + strandat 3749.162 kb on + strand, within IAI46_17785at 3749.163 kb on - strand, within IAI46_17785at 3749.239 kb on - strand, within IAI46_17785at 3749.281 kb on - strand, within IAI46_17785at 3749.447 kb on - strand, within IAI46_17785at 3749.480 kb on - strand, within IAI46_17785at 3749.582 kb on - strand, within IAI46_17785at 3749.582 kb on - strand, within IAI46_17785at 3749.582 kb on - strand, within IAI46_17785at 3749.612 kb on + strandat 3749.640 kb on + strandat 3749.641 kb on - strandat 3749.648 kb on - strandat 3749.671 kb on + strandat 3749.683 kb on + strandat 3749.701 kb on - strandat 3749.710 kb on + strandat 3749.756 kb on + strandat 3749.763 kb on + strandat 3749.778 kb on + strand, within IAI46_17790at 3749.779 kb on - strand, within IAI46_17790at 3749.779 kb on - strand, within IAI46_17790at 3749.779 kb on - strand, within IAI46_17790at 3749.805 kb on + strand, within IAI46_17790at 3749.806 kb on - strand, within IAI46_17790at 3749.817 kb on + strand, within IAI46_17790at 3749.817 kb on + strand, within IAI46_17790at 3749.818 kb on - strand, within IAI46_17790

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,747,049 - IAI46_17770 0.37 -0.3
3,747,109 + IAI46_17770 0.46 -0.0
3,747,109 + IAI46_17770 0.46 -0.1
3,747,170 + IAI46_17770 0.56 +0.7
3,747,171 - IAI46_17770 0.56 -0.0
3,747,214 - IAI46_17770 0.63 +1.2
3,747,274 - IAI46_17770 0.73 +0.8
3,747,291 + IAI46_17770 0.75 +0.9
3,747,291 + IAI46_17770 0.75 -1.1
3,747,292 - IAI46_17770 0.75 -0.5
3,747,315 + IAI46_17770 0.79 +0.9
3,747,315 + IAI46_17770 0.79 +0.0
3,747,482 - +0.4
3,747,501 - +1.2
3,747,511 + +0.3
3,747,605 - IAI46_17775 0.15 +0.9
3,747,617 - IAI46_17775 0.18 +0.5
3,747,663 + IAI46_17775 0.30 +0.9
3,747,674 + IAI46_17775 0.33 -1.6
3,747,725 + IAI46_17775 0.47 +0.4
3,747,767 - IAI46_17775 0.58 +0.2
3,747,839 + IAI46_17775 0.77 -0.5
3,747,849 + IAI46_17775 0.80 -0.2
3,747,849 + IAI46_17775 0.80 -0.5
3,747,849 + IAI46_17775 0.80 -0.1
3,747,855 + IAI46_17775 0.82 +0.1
3,747,855 + IAI46_17775 0.82 -0.5
3,747,855 + IAI46_17775 0.82 -0.0
3,747,856 - IAI46_17775 0.82 -0.0
3,747,856 - IAI46_17775 0.82 +0.3
3,747,859 + IAI46_17775 0.83 +1.4
3,747,860 - IAI46_17775 0.83 -1.5
3,747,860 - IAI46_17775 0.83 -0.7
3,747,860 - IAI46_17775 0.83 -0.2
3,747,864 + IAI46_17775 0.84 +1.0
3,747,865 - IAI46_17775 0.84 -0.5
3,747,985 + -0.1
3,748,302 + IAI46_17780 0.38 -0.0
3,748,445 - IAI46_17780 0.54 -1.0
3,748,445 - IAI46_17780 0.54 +0.4
3,748,575 - IAI46_17780 0.68 +0.4
3,748,578 + IAI46_17780 0.69 -0.6
3,748,579 - IAI46_17780 0.69 -0.2
3,748,579 - IAI46_17780 0.69 +1.4
3,748,616 + IAI46_17780 0.73 -0.5
3,748,630 - IAI46_17780 0.74 +0.5
3,748,873 + +0.4
3,748,874 - -1.0
3,748,874 - -0.6
3,748,874 - -0.6
3,748,875 + +0.2
3,749,162 + IAI46_17785 0.33 -0.7
3,749,163 - IAI46_17785 0.33 -0.8
3,749,239 - IAI46_17785 0.43 -2.7
3,749,281 - IAI46_17785 0.48 -0.7
3,749,447 - IAI46_17785 0.69 -0.1
3,749,480 - IAI46_17785 0.74 -0.1
3,749,582 - IAI46_17785 0.87 -0.3
3,749,582 - IAI46_17785 0.87 +0.4
3,749,582 - IAI46_17785 0.87 +0.5
3,749,612 + -0.1
3,749,640 + -0.3
3,749,641 - -0.3
3,749,648 - -0.1
3,749,671 + -0.5
3,749,683 + -0.0
3,749,701 - -0.8
3,749,710 + +1.9
3,749,756 + -1.1
3,749,763 + -0.7
3,749,778 + IAI46_17790 0.11 -2.2
3,749,779 - IAI46_17790 0.11 -0.4
3,749,779 - IAI46_17790 0.11 +0.7
3,749,779 - IAI46_17790 0.11 +1.6
3,749,805 + IAI46_17790 0.15 -0.7
3,749,806 - IAI46_17790 0.15 -1.1
3,749,817 + IAI46_17790 0.16 -0.4
3,749,817 + IAI46_17790 0.16 +0.4
3,749,818 - IAI46_17790 0.16 +1.0

Or see this region's nucleotide sequence