Strain Fitness in Serratia liquefaciens MT49 around IAI46_17685

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17675 and IAI46_17680 are separated by 14 nucleotidesIAI46_17680 and IAI46_17685 overlap by 4 nucleotidesIAI46_17685 and IAI46_17690 are separated by 79 nucleotides IAI46_17675: IAI46_17675 - NADH-quinone oxidoreductase subunit NuoI, at 3,724,055 to 3,724,597 _17675 IAI46_17680: IAI46_17680 - NADH-quinone oxidoreductase subunit NuoH, at 3,724,612 to 3,725,589 _17680 IAI46_17685: IAI46_17685 - NADH-quinone oxidoreductase subunit NuoG, at 3,725,586 to 3,728,324 _17685 IAI46_17690: IAI46_17690 - NADH-quinone oxidoreductase subunit NuoF, at 3,728,404 to 3,729,756 _17690 Position (kb) 3725 3726 3727 3728 3729Strain fitness (log2 ratio) -1 0 1 2at 3724.614 kb on - strandat 3724.700 kb on - strandat 3724.866 kb on - strand, within IAI46_17680at 3724.866 kb on - strand, within IAI46_17680at 3725.168 kb on + strand, within IAI46_17680at 3725.207 kb on + strand, within IAI46_17680at 3725.542 kb on - strandat 3725.797 kb on + strandat 3725.798 kb on - strandat 3725.798 kb on - strandat 3725.810 kb on + strandat 3725.810 kb on + strandat 3725.866 kb on + strand, within IAI46_17685at 3725.870 kb on - strand, within IAI46_17685at 3725.870 kb on - strand, within IAI46_17685at 3726.333 kb on - strand, within IAI46_17685at 3726.335 kb on - strand, within IAI46_17685at 3726.335 kb on - strand, within IAI46_17685at 3726.379 kb on - strand, within IAI46_17685at 3726.410 kb on - strand, within IAI46_17685at 3726.410 kb on - strand, within IAI46_17685at 3726.424 kb on + strand, within IAI46_17685at 3726.425 kb on - strand, within IAI46_17685at 3726.611 kb on - strand, within IAI46_17685at 3726.986 kb on - strand, within IAI46_17685at 3727.045 kb on + strand, within IAI46_17685at 3727.211 kb on - strand, within IAI46_17685at 3727.305 kb on - strand, within IAI46_17685at 3727.546 kb on + strand, within IAI46_17685at 3727.597 kb on + strand, within IAI46_17685at 3727.598 kb on - strand, within IAI46_17685at 3727.620 kb on - strand, within IAI46_17685at 3727.674 kb on - strand, within IAI46_17685at 3727.674 kb on - strand, within IAI46_17685at 3727.679 kb on + strand, within IAI46_17685at 3727.786 kb on + strand, within IAI46_17685at 3727.843 kb on + strand, within IAI46_17685at 3727.847 kb on - strand, within IAI46_17685at 3727.968 kb on + strand, within IAI46_17685at 3727.976 kb on + strand, within IAI46_17685at 3727.976 kb on + strand, within IAI46_17685at 3727.994 kb on + strand, within IAI46_17685at 3728.123 kb on + strandat 3728.167 kb on + strandat 3728.230 kb on + strandat 3728.287 kb on - strandat 3728.325 kb on - strandat 3728.919 kb on - strand, within IAI46_17690at 3729.098 kb on - strand, within IAI46_17690at 3729.192 kb on + strand, within IAI46_17690at 3729.193 kb on - strand, within IAI46_17690

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,724,614 - -0.8
3,724,700 - -0.4
3,724,866 - IAI46_17680 0.26 +0.5
3,724,866 - IAI46_17680 0.26 -0.5
3,725,168 + IAI46_17680 0.57 -0.6
3,725,207 + IAI46_17680 0.61 +1.4
3,725,542 - +0.4
3,725,797 + +0.7
3,725,798 - +1.0
3,725,798 - -1.6
3,725,810 + +0.7
3,725,810 + +0.0
3,725,866 + IAI46_17685 0.10 +0.6
3,725,870 - IAI46_17685 0.10 -0.9
3,725,870 - IAI46_17685 0.10 +1.0
3,726,333 - IAI46_17685 0.27 -1.7
3,726,335 - IAI46_17685 0.27 +1.3
3,726,335 - IAI46_17685 0.27 -0.4
3,726,379 - IAI46_17685 0.29 +0.0
3,726,410 - IAI46_17685 0.30 -0.9
3,726,410 - IAI46_17685 0.30 +0.1
3,726,424 + IAI46_17685 0.31 -0.0
3,726,425 - IAI46_17685 0.31 +1.0
3,726,611 - IAI46_17685 0.37 +1.6
3,726,986 - IAI46_17685 0.51 -0.4
3,727,045 + IAI46_17685 0.53 -0.1
3,727,211 - IAI46_17685 0.59 +0.0
3,727,305 - IAI46_17685 0.63 -1.5
3,727,546 + IAI46_17685 0.72 +0.9
3,727,597 + IAI46_17685 0.73 -1.1
3,727,598 - IAI46_17685 0.73 +0.6
3,727,620 - IAI46_17685 0.74 +0.1
3,727,674 - IAI46_17685 0.76 +1.9
3,727,674 - IAI46_17685 0.76 +0.0
3,727,679 + IAI46_17685 0.76 +1.6
3,727,786 + IAI46_17685 0.80 +0.8
3,727,843 + IAI46_17685 0.82 -0.3
3,727,847 - IAI46_17685 0.83 +0.5
3,727,968 + IAI46_17685 0.87 +0.5
3,727,976 + IAI46_17685 0.87 +0.1
3,727,976 + IAI46_17685 0.87 +1.7
3,727,994 + IAI46_17685 0.88 -0.5
3,728,123 + +0.8
3,728,167 + -1.5
3,728,230 + -1.1
3,728,287 - +1.1
3,728,325 - -0.1
3,728,919 - IAI46_17690 0.38 +2.7
3,729,098 - IAI46_17690 0.51 -0.1
3,729,192 + IAI46_17690 0.58 +0.9
3,729,193 - IAI46_17690 0.58 +0.9

Or see this region's nucleotide sequence