Strain Fitness in Serratia liquefaciens MT49 around IAI46_17515

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17510 and IAI46_17515 are separated by 3 nucleotidesIAI46_17515 and IAI46_17520 are separated by 294 nucleotides IAI46_17510: IAI46_17510 - ribonucleotide-diphosphate reductase subunit beta, at 3,681,491 to 3,682,621 _17510 IAI46_17515: IAI46_17515 - 2Fe-2S ferredoxin-like protein, at 3,682,625 to 3,682,885 _17515 IAI46_17520: IAI46_17520 - nicotinamide mononucleotide deamidase-related protein YfaY, at 3,683,180 to 3,684,376 _17520 Position (kb) 3682 3683Strain fitness (log2 ratio) -2 -1 0 1 2at 3682.652 kb on - strand, within IAI46_17515at 3682.734 kb on - strand, within IAI46_17515at 3682.734 kb on - strand, within IAI46_17515at 3682.780 kb on - strand, within IAI46_17515at 3682.916 kb on - strandat 3682.917 kb on + strandat 3682.917 kb on + strandat 3682.917 kb on + strandat 3682.917 kb on + strandat 3682.917 kb on + strandat 3682.917 kb on - strandat 3682.918 kb on - strandat 3682.922 kb on + strandat 3682.936 kb on + strandat 3682.972 kb on + strandat 3682.975 kb on - strandat 3682.997 kb on - strandat 3683.082 kb on + strandat 3683.113 kb on + strandat 3683.114 kb on - strandat 3683.226 kb on - strandat 3683.261 kb on + strandat 3683.302 kb on + strand, within IAI46_17520at 3683.324 kb on + strand, within IAI46_17520at 3683.325 kb on - strand, within IAI46_17520at 3683.354 kb on - strand, within IAI46_17520at 3683.354 kb on - strand, within IAI46_17520at 3683.354 kb on - strand, within IAI46_17520at 3683.354 kb on - strand, within IAI46_17520at 3683.420 kb on + strand, within IAI46_17520at 3683.641 kb on + strand, within IAI46_17520at 3683.642 kb on - strand, within IAI46_17520at 3683.812 kb on + strand, within IAI46_17520at 3683.852 kb on + strand, within IAI46_17520at 3683.853 kb on - strand, within IAI46_17520at 3683.858 kb on - strand, within IAI46_17520

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,682,652 - IAI46_17515 0.10 -0.3
3,682,734 - IAI46_17515 0.42 -0.0
3,682,734 - IAI46_17515 0.42 +0.4
3,682,780 - IAI46_17515 0.59 +0.3
3,682,916 - +0.2
3,682,917 + +0.3
3,682,917 + -0.1
3,682,917 + -1.6
3,682,917 + +0.1
3,682,917 + +0.2
3,682,917 - -2.3
3,682,918 - +0.7
3,682,922 + +0.9
3,682,936 + +0.2
3,682,972 + +0.1
3,682,975 - -0.3
3,682,997 - +0.6
3,683,082 + +1.0
3,683,113 + -0.2
3,683,114 - +0.2
3,683,226 - -0.4
3,683,261 + -0.2
3,683,302 + IAI46_17520 0.10 -0.3
3,683,324 + IAI46_17520 0.12 +1.5
3,683,325 - IAI46_17520 0.12 +2.6
3,683,354 - IAI46_17520 0.15 -0.2
3,683,354 - IAI46_17520 0.15 -0.2
3,683,354 - IAI46_17520 0.15 +0.8
3,683,354 - IAI46_17520 0.15 +0.8
3,683,420 + IAI46_17520 0.20 -0.9
3,683,641 + IAI46_17520 0.39 +0.0
3,683,642 - IAI46_17520 0.39 -1.3
3,683,812 + IAI46_17520 0.53 +0.5
3,683,852 + IAI46_17520 0.56 +0.9
3,683,853 - IAI46_17520 0.56 -0.5
3,683,858 - IAI46_17520 0.57 +0.2

Or see this region's nucleotide sequence