Strain Fitness in Serratia liquefaciens MT49 around IAI46_17465

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17460 and IAI46_17465 are separated by 212 nucleotidesIAI46_17465 and IAI46_17470 are separated by 60 nucleotides IAI46_17460: IAI46_17460 - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 3,668,263 to 3,670,914 _17460 IAI46_17465: IAI46_17465 - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 3,671,127 to 3,671,852 _17465 IAI46_17470: IAI46_17470 - FadR family transcriptional regulator, at 3,671,913 to 3,672,641 _17470 Position (kb) 3671 3672Strain fitness (log2 ratio) -2 -1 0 1 2at 3670.973 kb on - strandat 3670.973 kb on - strandat 3670.973 kb on - strandat 3670.979 kb on - strandat 3670.997 kb on + strandat 3671.037 kb on + strandat 3671.037 kb on + strandat 3671.037 kb on + strandat 3671.037 kb on + strandat 3671.037 kb on + strandat 3671.037 kb on + strandat 3671.037 kb on + strandat 3671.037 kb on + strandat 3671.037 kb on + strandat 3671.038 kb on - strandat 3671.039 kb on + strandat 3671.039 kb on + strandat 3671.039 kb on + strandat 3671.039 kb on + strandat 3671.039 kb on + strandat 3671.039 kb on + strandat 3671.039 kb on + strandat 3671.039 kb on + strandat 3671.039 kb on + strandat 3671.040 kb on - strandat 3671.040 kb on - strandat 3671.040 kb on - strandat 3671.040 kb on - strandat 3671.040 kb on - strandat 3671.040 kb on - strandat 3671.040 kb on - strandat 3671.040 kb on - strandat 3671.040 kb on - strandat 3671.049 kb on - strandat 3671.088 kb on + strandat 3671.089 kb on - strandat 3671.089 kb on - strandat 3671.090 kb on + strandat 3671.834 kb on + strandat 3671.834 kb on + strandat 3671.875 kb on + strandat 3671.900 kb on + strandat 3672.105 kb on - strand, within IAI46_17470at 3672.105 kb on - strand, within IAI46_17470at 3672.105 kb on - strand, within IAI46_17470at 3672.105 kb on - strand, within IAI46_17470at 3672.105 kb on - strand, within IAI46_17470at 3672.105 kb on - strand, within IAI46_17470at 3672.139 kb on - strand, within IAI46_17470at 3672.176 kb on + strand, within IAI46_17470at 3672.191 kb on + strand, within IAI46_17470at 3672.192 kb on - strand, within IAI46_17470at 3672.207 kb on - strand, within IAI46_17470at 3672.441 kb on + strand, within IAI46_17470at 3672.571 kb on - strandat 3672.576 kb on - strandat 3672.586 kb on + strandat 3672.587 kb on - strandat 3672.587 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,670,973 - -0.1
3,670,973 - -0.3
3,670,973 - +0.2
3,670,979 - +1.1
3,670,997 + -0.4
3,671,037 + +0.7
3,671,037 + +0.7
3,671,037 + +0.4
3,671,037 + +1.2
3,671,037 + +0.5
3,671,037 + -0.6
3,671,037 + -0.3
3,671,037 + +0.9
3,671,037 + +0.8
3,671,038 - -0.6
3,671,039 + +0.7
3,671,039 + +0.6
3,671,039 + -0.4
3,671,039 + -0.9
3,671,039 + +0.8
3,671,039 + +0.2
3,671,039 + +0.4
3,671,039 + +0.5
3,671,039 + +0.8
3,671,040 - -0.3
3,671,040 - +0.7
3,671,040 - -0.1
3,671,040 - -0.6
3,671,040 - -0.6
3,671,040 - +0.3
3,671,040 - +0.3
3,671,040 - +0.4
3,671,040 - -2.2
3,671,049 - -0.3
3,671,088 + +0.0
3,671,089 - +1.1
3,671,089 - +0.2
3,671,090 + +0.0
3,671,834 + -1.4
3,671,834 + +1.1
3,671,875 + +0.4
3,671,900 + +0.4
3,672,105 - IAI46_17470 0.26 -0.8
3,672,105 - IAI46_17470 0.26 +1.0
3,672,105 - IAI46_17470 0.26 -0.4
3,672,105 - IAI46_17470 0.26 +0.7
3,672,105 - IAI46_17470 0.26 -0.0
3,672,105 - IAI46_17470 0.26 -0.5
3,672,139 - IAI46_17470 0.31 -0.5
3,672,176 + IAI46_17470 0.36 -1.1
3,672,191 + IAI46_17470 0.38 +0.2
3,672,192 - IAI46_17470 0.38 -1.4
3,672,207 - IAI46_17470 0.40 +0.4
3,672,441 + IAI46_17470 0.72 +1.8
3,672,571 - +0.5
3,672,576 - -0.1
3,672,586 + +0.2
3,672,587 - +0.8
3,672,587 - +0.3

Or see this region's nucleotide sequence