Strain Fitness in Serratia liquefaciens MT49 around IAI46_17415

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17405 and IAI46_17410 are separated by 79 nucleotidesIAI46_17410 and IAI46_17415 are separated by 6 nucleotidesIAI46_17415 and IAI46_17420 are separated by 112 nucleotidesIAI46_17420 and IAI46_17425 overlap by 7 nucleotides IAI46_17405: IAI46_17405 - HARLDQ motif MBL-fold protein, at 3,654,738 to 3,655,634 _17405 IAI46_17410: IAI46_17410 - LysR family transcriptional regulator, at 3,655,714 to 3,656,616 _17410 IAI46_17415: IAI46_17415 - nuclear transport factor 2 family protein, at 3,656,623 to 3,657,090 _17415 IAI46_17420: IAI46_17420 - TetR/AcrR family transcriptional regulator, at 3,657,203 to 3,657,781 _17420 IAI46_17425: IAI46_17425 - VOC family protein, at 3,657,775 to 3,658,191 _17425 Position (kb) 3656 3657 3658Strain fitness (log2 ratio) -2 -1 0 1 2at 3655.669 kb on - strandat 3655.670 kb on + strandat 3655.671 kb on - strandat 3655.709 kb on + strandat 3655.709 kb on + strandat 3655.710 kb on - strandat 3655.932 kb on - strand, within IAI46_17410at 3656.033 kb on + strand, within IAI46_17410at 3656.139 kb on + strand, within IAI46_17410at 3656.139 kb on + strand, within IAI46_17410at 3656.140 kb on - strand, within IAI46_17410at 3656.140 kb on - strand, within IAI46_17410at 3656.140 kb on - strand, within IAI46_17410at 3656.140 kb on - strand, within IAI46_17410at 3656.140 kb on - strand, within IAI46_17410at 3656.197 kb on - strand, within IAI46_17410at 3656.197 kb on - strand, within IAI46_17410at 3656.246 kb on + strand, within IAI46_17410at 3656.249 kb on + strand, within IAI46_17410at 3656.249 kb on + strand, within IAI46_17410at 3656.249 kb on + strand, within IAI46_17410at 3656.249 kb on + strand, within IAI46_17410at 3656.250 kb on - strand, within IAI46_17410at 3656.299 kb on + strand, within IAI46_17410at 3656.299 kb on + strand, within IAI46_17410at 3656.299 kb on + strand, within IAI46_17410at 3656.300 kb on - strand, within IAI46_17410at 3656.302 kb on + strand, within IAI46_17410at 3656.303 kb on - strand, within IAI46_17410at 3656.303 kb on - strand, within IAI46_17410at 3656.303 kb on - strand, within IAI46_17410at 3656.363 kb on + strand, within IAI46_17410at 3656.415 kb on - strand, within IAI46_17410at 3656.441 kb on + strand, within IAI46_17410at 3656.441 kb on + strand, within IAI46_17410at 3656.488 kb on + strand, within IAI46_17410at 3656.489 kb on - strand, within IAI46_17410at 3656.524 kb on + strand, within IAI46_17410at 3656.524 kb on + strand, within IAI46_17410at 3656.524 kb on + strand, within IAI46_17410at 3656.539 kb on + strandat 3656.605 kb on + strandat 3656.606 kb on - strandat 3656.608 kb on + strandat 3656.609 kb on - strandat 3656.620 kb on + strandat 3656.653 kb on - strandat 3656.712 kb on + strand, within IAI46_17415at 3656.754 kb on + strand, within IAI46_17415at 3657.090 kb on + strandat 3657.090 kb on + strandat 3657.090 kb on + strandat 3657.091 kb on - strandat 3657.091 kb on - strandat 3657.091 kb on - strandat 3657.096 kb on - strandat 3657.139 kb on + strandat 3657.140 kb on - strandat 3657.197 kb on - strandat 3657.242 kb on - strandat 3657.282 kb on + strand, within IAI46_17420at 3657.282 kb on + strand, within IAI46_17420at 3657.342 kb on - strand, within IAI46_17420at 3657.437 kb on + strand, within IAI46_17420at 3657.437 kb on + strand, within IAI46_17420at 3657.437 kb on + strand, within IAI46_17420at 3657.462 kb on + strand, within IAI46_17420at 3657.462 kb on + strand, within IAI46_17420at 3657.462 kb on + strand, within IAI46_17420at 3657.462 kb on + strand, within IAI46_17420at 3657.463 kb on - strand, within IAI46_17420at 3657.532 kb on + strand, within IAI46_17420at 3657.621 kb on - strand, within IAI46_17420at 3657.765 kb on + strandat 3657.779 kb on + strandat 3657.839 kb on + strand, within IAI46_17425at 3657.840 kb on - strand, within IAI46_17425at 3657.880 kb on + strand, within IAI46_17425at 3657.880 kb on + strand, within IAI46_17425at 3657.880 kb on + strand, within IAI46_17425at 3657.881 kb on - strand, within IAI46_17425at 3657.985 kb on - strand, within IAI46_17425at 3657.986 kb on + strand, within IAI46_17425at 3657.986 kb on + strand, within IAI46_17425at 3657.986 kb on + strand, within IAI46_17425at 3657.987 kb on - strand, within IAI46_17425at 3657.987 kb on - strand, within IAI46_17425at 3657.987 kb on - strand, within IAI46_17425

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,655,669 - -0.2
3,655,670 + -0.2
3,655,671 - -0.0
3,655,709 + -0.8
3,655,709 + -0.3
3,655,710 - -1.5
3,655,932 - IAI46_17410 0.24 +0.5
3,656,033 + IAI46_17410 0.35 +0.9
3,656,139 + IAI46_17410 0.47 -0.9
3,656,139 + IAI46_17410 0.47 +1.8
3,656,140 - IAI46_17410 0.47 -0.2
3,656,140 - IAI46_17410 0.47 -1.2
3,656,140 - IAI46_17410 0.47 +0.3
3,656,140 - IAI46_17410 0.47 +0.4
3,656,140 - IAI46_17410 0.47 +0.1
3,656,197 - IAI46_17410 0.53 -1.2
3,656,197 - IAI46_17410 0.53 +0.3
3,656,246 + IAI46_17410 0.59 +0.2
3,656,249 + IAI46_17410 0.59 +0.2
3,656,249 + IAI46_17410 0.59 +0.9
3,656,249 + IAI46_17410 0.59 +0.3
3,656,249 + IAI46_17410 0.59 -0.3
3,656,250 - IAI46_17410 0.59 +1.0
3,656,299 + IAI46_17410 0.65 +0.2
3,656,299 + IAI46_17410 0.65 -0.1
3,656,299 + IAI46_17410 0.65 -0.2
3,656,300 - IAI46_17410 0.65 -1.0
3,656,302 + IAI46_17410 0.65 +1.8
3,656,303 - IAI46_17410 0.65 +0.2
3,656,303 - IAI46_17410 0.65 -1.2
3,656,303 - IAI46_17410 0.65 +0.8
3,656,363 + IAI46_17410 0.72 +0.6
3,656,415 - IAI46_17410 0.78 -2.2
3,656,441 + IAI46_17410 0.81 +0.1
3,656,441 + IAI46_17410 0.81 +0.2
3,656,488 + IAI46_17410 0.86 +1.4
3,656,489 - IAI46_17410 0.86 -0.1
3,656,524 + IAI46_17410 0.90 -0.3
3,656,524 + IAI46_17410 0.90 +0.5
3,656,524 + IAI46_17410 0.90 +0.4
3,656,539 + -0.5
3,656,605 + +0.4
3,656,606 - -0.0
3,656,608 + +1.6
3,656,609 - +0.8
3,656,620 + -1.1
3,656,653 - -0.2
3,656,712 + IAI46_17415 0.19 -0.4
3,656,754 + IAI46_17415 0.28 +0.1
3,657,090 + +0.4
3,657,090 + +0.1
3,657,090 + -0.0
3,657,091 - +0.5
3,657,091 - -0.7
3,657,091 - -0.1
3,657,096 - +0.4
3,657,139 + -1.0
3,657,140 - +0.9
3,657,197 - +1.0
3,657,242 - -0.0
3,657,282 + IAI46_17420 0.14 -0.7
3,657,282 + IAI46_17420 0.14 +0.5
3,657,342 - IAI46_17420 0.24 -0.4
3,657,437 + IAI46_17420 0.40 -1.6
3,657,437 + IAI46_17420 0.40 -0.1
3,657,437 + IAI46_17420 0.40 +0.3
3,657,462 + IAI46_17420 0.45 -0.1
3,657,462 + IAI46_17420 0.45 +0.0
3,657,462 + IAI46_17420 0.45 -0.3
3,657,462 + IAI46_17420 0.45 +0.3
3,657,463 - IAI46_17420 0.45 -0.5
3,657,532 + IAI46_17420 0.57 +0.0
3,657,621 - IAI46_17420 0.72 -0.5
3,657,765 + +0.7
3,657,779 + +0.6
3,657,839 + IAI46_17425 0.15 +1.3
3,657,840 - IAI46_17425 0.16 +0.9
3,657,880 + IAI46_17425 0.25 -1.5
3,657,880 + IAI46_17425 0.25 +0.7
3,657,880 + IAI46_17425 0.25 +1.3
3,657,881 - IAI46_17425 0.25 +1.2
3,657,985 - IAI46_17425 0.50 +1.2
3,657,986 + IAI46_17425 0.51 -1.7
3,657,986 + IAI46_17425 0.51 -0.2
3,657,986 + IAI46_17425 0.51 +0.2
3,657,987 - IAI46_17425 0.51 -0.1
3,657,987 - IAI46_17425 0.51 -0.3
3,657,987 - IAI46_17425 0.51 +0.3

Or see this region's nucleotide sequence