Strain Fitness in Serratia liquefaciens MT49 around IAI46_17235

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17230 and IAI46_17235 are separated by 11 nucleotidesIAI46_17235 and IAI46_17240 overlap by 4 nucleotides IAI46_17230: IAI46_17230 - PTS fructose transporter subunit IIBC, at 3,616,343 to 3,618,031 _17230 IAI46_17235: IAI46_17235 - 1-phosphofructokinase, at 3,618,043 to 3,618,984 _17235 IAI46_17240: IAI46_17240 - fused PTS fructose transporter subunit IIA/HPr protein, at 3,618,981 to 3,620,114 _17240 Position (kb) 3618 3619Strain fitness (log2 ratio) -2 -1 0 1 2at 3617.123 kb on + strand, within IAI46_17230at 3617.168 kb on - strand, within IAI46_17230at 3617.325 kb on + strand, within IAI46_17230at 3617.325 kb on + strand, within IAI46_17230at 3617.325 kb on + strand, within IAI46_17230at 3617.326 kb on - strand, within IAI46_17230at 3617.326 kb on - strand, within IAI46_17230at 3617.486 kb on - strand, within IAI46_17230at 3617.486 kb on - strand, within IAI46_17230at 3617.486 kb on - strand, within IAI46_17230at 3617.490 kb on + strand, within IAI46_17230at 3617.578 kb on + strand, within IAI46_17230at 3617.678 kb on - strand, within IAI46_17230at 3617.770 kb on - strand, within IAI46_17230at 3617.879 kb on + strandat 3617.986 kb on + strandat 3617.987 kb on - strandat 3618.012 kb on - strandat 3618.045 kb on - strandat 3618.052 kb on - strandat 3618.052 kb on - strandat 3618.052 kb on - strandat 3618.052 kb on - strandat 3618.711 kb on + strand, within IAI46_17235at 3618.712 kb on - strand, within IAI46_17235at 3618.712 kb on - strand, within IAI46_17235at 3618.944 kb on + strandat 3618.960 kb on + strandat 3618.970 kb on + strandat 3618.971 kb on - strandat 3619.109 kb on - strand, within IAI46_17240at 3619.118 kb on + strand, within IAI46_17240at 3619.119 kb on - strand, within IAI46_17240at 3619.367 kb on - strand, within IAI46_17240at 3619.645 kb on - strand, within IAI46_17240at 3619.711 kb on - strand, within IAI46_17240at 3619.830 kb on + strand, within IAI46_17240at 3619.830 kb on + strand, within IAI46_17240at 3619.834 kb on + strand, within IAI46_17240at 3619.834 kb on + strand, within IAI46_17240at 3619.835 kb on - strand, within IAI46_17240at 3619.835 kb on - strand, within IAI46_17240at 3619.957 kb on + strand, within IAI46_17240at 3619.957 kb on + strand, within IAI46_17240at 3619.958 kb on - strand, within IAI46_17240

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,617,123 + IAI46_17230 0.46 +1.1
3,617,168 - IAI46_17230 0.49 +1.0
3,617,325 + IAI46_17230 0.58 +0.3
3,617,325 + IAI46_17230 0.58 -0.2
3,617,325 + IAI46_17230 0.58 -0.7
3,617,326 - IAI46_17230 0.58 +0.1
3,617,326 - IAI46_17230 0.58 +0.1
3,617,486 - IAI46_17230 0.68 +0.5
3,617,486 - IAI46_17230 0.68 +0.5
3,617,486 - IAI46_17230 0.68 +0.1
3,617,490 + IAI46_17230 0.68 +0.8
3,617,578 + IAI46_17230 0.73 +0.3
3,617,678 - IAI46_17230 0.79 -0.0
3,617,770 - IAI46_17230 0.84 +0.6
3,617,879 + -0.0
3,617,986 + -0.7
3,617,987 - +0.8
3,618,012 - +1.1
3,618,045 - -0.4
3,618,052 - +0.7
3,618,052 - +0.5
3,618,052 - +0.6
3,618,052 - -0.1
3,618,711 + IAI46_17235 0.71 -0.2
3,618,712 - IAI46_17235 0.71 +0.2
3,618,712 - IAI46_17235 0.71 +0.4
3,618,944 + +1.5
3,618,960 + +0.1
3,618,970 + +1.6
3,618,971 - -0.1
3,619,109 - IAI46_17240 0.11 +0.9
3,619,118 + IAI46_17240 0.12 +0.3
3,619,119 - IAI46_17240 0.12 -0.2
3,619,367 - IAI46_17240 0.34 +0.1
3,619,645 - IAI46_17240 0.59 +1.8
3,619,711 - IAI46_17240 0.64 -2.2
3,619,830 + IAI46_17240 0.75 +0.4
3,619,830 + IAI46_17240 0.75 +0.2
3,619,834 + IAI46_17240 0.75 -0.0
3,619,834 + IAI46_17240 0.75 -1.6
3,619,835 - IAI46_17240 0.75 +0.4
3,619,835 - IAI46_17240 0.75 -0.0
3,619,957 + IAI46_17240 0.86 +0.4
3,619,957 + IAI46_17240 0.86 -1.9
3,619,958 - IAI46_17240 0.86 +0.6

Or see this region's nucleotide sequence