Strain Fitness in Serratia liquefaciens MT49 around IAI46_17045

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_17040 and IAI46_17045 are separated by 161 nucleotidesIAI46_17045 and IAI46_17050 are separated by 23 nucleotides IAI46_17040: IAI46_17040 - sugar transporter, at 3,574,126 to 3,575,316 _17040 IAI46_17045: IAI46_17045 - sugar phosphate isomerase/epimerase, at 3,575,478 to 3,576,419 _17045 IAI46_17050: IAI46_17050 - Gfo/Idh/MocA family oxidoreductase, at 3,576,443 to 3,577,621 _17050 Position (kb) 3575 3576 3577Strain fitness (log2 ratio) -2 -1 0 1 2at 3574.611 kb on + strand, within IAI46_17040at 3574.612 kb on - strand, within IAI46_17040at 3574.623 kb on + strand, within IAI46_17040at 3574.626 kb on - strand, within IAI46_17040at 3574.631 kb on + strand, within IAI46_17040at 3574.631 kb on + strand, within IAI46_17040at 3574.631 kb on + strand, within IAI46_17040at 3574.632 kb on - strand, within IAI46_17040at 3574.671 kb on + strand, within IAI46_17040at 3574.672 kb on - strand, within IAI46_17040at 3574.673 kb on + strand, within IAI46_17040at 3574.674 kb on - strand, within IAI46_17040at 3574.674 kb on - strand, within IAI46_17040at 3575.038 kb on + strand, within IAI46_17040at 3575.039 kb on - strand, within IAI46_17040at 3575.039 kb on - strand, within IAI46_17040at 3575.053 kb on - strand, within IAI46_17040at 3575.059 kb on + strand, within IAI46_17040at 3575.112 kb on + strand, within IAI46_17040at 3575.113 kb on - strand, within IAI46_17040at 3575.113 kb on - strand, within IAI46_17040at 3575.147 kb on + strand, within IAI46_17040at 3575.248 kb on - strandat 3575.300 kb on - strandat 3575.385 kb on + strandat 3575.385 kb on + strandat 3575.499 kb on + strandat 3575.516 kb on + strandat 3575.516 kb on + strandat 3575.517 kb on - strandat 3575.517 kb on - strandat 3575.520 kb on - strandat 3575.520 kb on - strandat 3575.578 kb on + strand, within IAI46_17045at 3575.579 kb on - strand, within IAI46_17045at 3575.593 kb on - strand, within IAI46_17045at 3575.650 kb on + strand, within IAI46_17045at 3575.651 kb on - strand, within IAI46_17045at 3575.651 kb on - strand, within IAI46_17045at 3575.651 kb on - strand, within IAI46_17045at 3575.928 kb on + strand, within IAI46_17045at 3576.037 kb on + strand, within IAI46_17045at 3576.037 kb on + strand, within IAI46_17045at 3576.038 kb on - strand, within IAI46_17045at 3576.038 kb on - strand, within IAI46_17045at 3576.038 kb on - strand, within IAI46_17045at 3576.038 kb on - strand, within IAI46_17045at 3576.038 kb on - strand, within IAI46_17045at 3576.050 kb on + strand, within IAI46_17045at 3576.438 kb on + strandat 3576.438 kb on + strandat 3576.439 kb on - strandat 3576.439 kb on - strandat 3576.538 kb on - strandat 3576.687 kb on + strand, within IAI46_17050at 3576.984 kb on + strand, within IAI46_17050at 3576.984 kb on + strand, within IAI46_17050at 3577.000 kb on + strand, within IAI46_17050at 3577.102 kb on + strand, within IAI46_17050at 3577.103 kb on - strand, within IAI46_17050at 3577.105 kb on - strand, within IAI46_17050at 3577.105 kb on - strand, within IAI46_17050at 3577.105 kb on - strand, within IAI46_17050at 3577.124 kb on + strand, within IAI46_17050at 3577.124 kb on + strand, within IAI46_17050at 3577.194 kb on + strand, within IAI46_17050at 3577.402 kb on + strand, within IAI46_17050at 3577.402 kb on + strand, within IAI46_17050at 3577.402 kb on + strand, within IAI46_17050at 3577.403 kb on - strand, within IAI46_17050at 3577.403 kb on - strand, within IAI46_17050at 3577.417 kb on - strand, within IAI46_17050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
remove
3,574,611 + IAI46_17040 0.41 +0.8
3,574,612 - IAI46_17040 0.41 +0.7
3,574,623 + IAI46_17040 0.42 +0.2
3,574,626 - IAI46_17040 0.42 +1.1
3,574,631 + IAI46_17040 0.42 -0.2
3,574,631 + IAI46_17040 0.42 +0.4
3,574,631 + IAI46_17040 0.42 -1.4
3,574,632 - IAI46_17040 0.42 +0.5
3,574,671 + IAI46_17040 0.46 -0.2
3,574,672 - IAI46_17040 0.46 +0.2
3,574,673 + IAI46_17040 0.46 -0.5
3,574,674 - IAI46_17040 0.46 -0.1
3,574,674 - IAI46_17040 0.46 +1.3
3,575,038 + IAI46_17040 0.77 -0.7
3,575,039 - IAI46_17040 0.77 -0.2
3,575,039 - IAI46_17040 0.77 +0.3
3,575,053 - IAI46_17040 0.78 -1.0
3,575,059 + IAI46_17040 0.78 -0.2
3,575,112 + IAI46_17040 0.83 +0.2
3,575,113 - IAI46_17040 0.83 -0.2
3,575,113 - IAI46_17040 0.83 +0.0
3,575,147 + IAI46_17040 0.86 +0.1
3,575,248 - -0.5
3,575,300 - +0.3
3,575,385 + -0.1
3,575,385 + +0.2
3,575,499 + +0.8
3,575,516 + +1.0
3,575,516 + -1.2
3,575,517 - -2.4
3,575,517 - +0.4
3,575,520 - +0.2
3,575,520 - -0.5
3,575,578 + IAI46_17045 0.11 +0.2
3,575,579 - IAI46_17045 0.11 -0.1
3,575,593 - IAI46_17045 0.12 +0.7
3,575,650 + IAI46_17045 0.18 +0.1
3,575,651 - IAI46_17045 0.18 -0.8
3,575,651 - IAI46_17045 0.18 +0.5
3,575,651 - IAI46_17045 0.18 +1.8
3,575,928 + IAI46_17045 0.48 +0.4
3,576,037 + IAI46_17045 0.59 +0.8
3,576,037 + IAI46_17045 0.59 +0.4
3,576,038 - IAI46_17045 0.59 -0.3
3,576,038 - IAI46_17045 0.59 -0.4
3,576,038 - IAI46_17045 0.59 -0.6
3,576,038 - IAI46_17045 0.59 +1.8
3,576,038 - IAI46_17045 0.59 +0.8
3,576,050 + IAI46_17045 0.61 +0.1
3,576,438 + -0.9
3,576,438 + -0.5
3,576,439 - -0.4
3,576,439 - -0.0
3,576,538 - +0.5
3,576,687 + IAI46_17050 0.21 -0.7
3,576,984 + IAI46_17050 0.46 +0.6
3,576,984 + IAI46_17050 0.46 -0.4
3,577,000 + IAI46_17050 0.47 -0.3
3,577,102 + IAI46_17050 0.56 +0.1
3,577,103 - IAI46_17050 0.56 +1.0
3,577,105 - IAI46_17050 0.56 -0.2
3,577,105 - IAI46_17050 0.56 +0.2
3,577,105 - IAI46_17050 0.56 +1.0
3,577,124 + IAI46_17050 0.58 -0.4
3,577,124 + IAI46_17050 0.58 +0.4
3,577,194 + IAI46_17050 0.64 +0.1
3,577,402 + IAI46_17050 0.81 -0.3
3,577,402 + IAI46_17050 0.81 +0.1
3,577,402 + IAI46_17050 0.81 -2.1
3,577,403 - IAI46_17050 0.81 -0.0
3,577,403 - IAI46_17050 0.81 -0.8
3,577,417 - IAI46_17050 0.83 +0.1

Or see this region's nucleotide sequence