Strain Fitness in Serratia liquefaciens MT49 around IAI46_16300

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16295 and IAI46_16300 are separated by 3 nucleotidesIAI46_16300 and IAI46_16305 are separated by 92 nucleotidesIAI46_16305 and IAI46_16310 are separated by 523 nucleotides IAI46_16295: IAI46_16295 - LysR family transcriptional regulator, at 3,415,998 to 3,416,930 _16295 IAI46_16300: IAI46_16300 - DUF937 domain-containing protein, at 3,416,934 to 3,417,320 _16300 IAI46_16305: IAI46_16305 - GlsB/YeaQ/YmgE family stress response membrane protein, at 3,417,413 to 3,417,661 _16305 IAI46_16310: IAI46_16310 - LysR family transcriptional regulator, at 3,418,185 to 3,419,087 _16310 Position (kb) 3416 3417 3418Strain fitness (log2 ratio) -2 -1 0 1at 3415.960 kb on - strandat 3415.969 kb on + strandat 3415.970 kb on - strandat 3415.972 kb on - strandat 3415.972 kb on - strandat 3415.976 kb on - strandat 3415.976 kb on - strandat 3416.441 kb on - strand, within IAI46_16295at 3416.441 kb on - strand, within IAI46_16295at 3416.509 kb on - strand, within IAI46_16295at 3416.605 kb on + strand, within IAI46_16295at 3416.605 kb on + strand, within IAI46_16295at 3416.605 kb on + strand, within IAI46_16295at 3416.606 kb on - strand, within IAI46_16295at 3416.664 kb on - strand, within IAI46_16295at 3416.664 kb on - strand, within IAI46_16295at 3416.856 kb on + strandat 3416.879 kb on + strandat 3416.880 kb on - strandat 3416.880 kb on - strandat 3416.891 kb on + strandat 3417.132 kb on - strand, within IAI46_16300at 3417.257 kb on - strand, within IAI46_16300at 3417.300 kb on + strandat 3417.300 kb on + strandat 3417.301 kb on - strandat 3417.323 kb on + strandat 3417.520 kb on + strand, within IAI46_16305at 3417.521 kb on - strand, within IAI46_16305at 3417.526 kb on + strand, within IAI46_16305at 3417.527 kb on - strand, within IAI46_16305at 3417.528 kb on + strand, within IAI46_16305at 3417.529 kb on - strand, within IAI46_16305at 3417.529 kb on - strand, within IAI46_16305at 3417.563 kb on - strand, within IAI46_16305at 3417.602 kb on - strand, within IAI46_16305at 3417.602 kb on - strand, within IAI46_16305at 3417.665 kb on + strandat 3417.675 kb on - strandat 3417.822 kb on - strandat 3417.833 kb on + strandat 3417.833 kb on + strandat 3417.836 kb on + strandat 3417.837 kb on - strandat 3417.837 kb on - strandat 3417.837 kb on - strandat 3417.837 kb on - strandat 3417.838 kb on + strandat 3417.882 kb on - strandat 3417.930 kb on + strandat 3417.932 kb on + strandat 3417.932 kb on + strandat 3417.933 kb on - strandat 3417.947 kb on - strandat 3417.947 kb on - strandat 3417.992 kb on + strandat 3418.208 kb on + strandat 3418.208 kb on + strandat 3418.209 kb on - strandat 3418.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,415,960 - +0.8
3,415,969 + +0.1
3,415,970 - +0.1
3,415,972 - +1.7
3,415,972 - -1.3
3,415,976 - -0.8
3,415,976 - -0.1
3,416,441 - IAI46_16295 0.47 +0.4
3,416,441 - IAI46_16295 0.47 +0.9
3,416,509 - IAI46_16295 0.55 +1.0
3,416,605 + IAI46_16295 0.65 +0.3
3,416,605 + IAI46_16295 0.65 -0.1
3,416,605 + IAI46_16295 0.65 +0.2
3,416,606 - IAI46_16295 0.65 +0.9
3,416,664 - IAI46_16295 0.71 +0.4
3,416,664 - IAI46_16295 0.71 +0.0
3,416,856 + -0.1
3,416,879 + +0.2
3,416,880 - +0.8
3,416,880 - +0.0
3,416,891 + +0.1
3,417,132 - IAI46_16300 0.51 +0.7
3,417,257 - IAI46_16300 0.83 -0.8
3,417,300 + -1.2
3,417,300 + +0.1
3,417,301 - +0.2
3,417,323 + -0.3
3,417,520 + IAI46_16305 0.43 +0.2
3,417,521 - IAI46_16305 0.43 +0.4
3,417,526 + IAI46_16305 0.45 -0.2
3,417,527 - IAI46_16305 0.46 +0.7
3,417,528 + IAI46_16305 0.46 -1.5
3,417,529 - IAI46_16305 0.47 +0.2
3,417,529 - IAI46_16305 0.47 -0.5
3,417,563 - IAI46_16305 0.60 +0.2
3,417,602 - IAI46_16305 0.76 +0.1
3,417,602 - IAI46_16305 0.76 +0.4
3,417,665 + -1.2
3,417,675 - +0.9
3,417,822 - -0.2
3,417,833 + +0.1
3,417,833 + -0.5
3,417,836 + +0.1
3,417,837 - +0.7
3,417,837 - -1.9
3,417,837 - +0.2
3,417,837 - -0.7
3,417,838 + -0.1
3,417,882 - +0.6
3,417,930 + -2.0
3,417,932 + -0.9
3,417,932 + -0.7
3,417,933 - +0.3
3,417,947 - +1.2
3,417,947 - +0.1
3,417,992 + +0.7
3,418,208 + -0.8
3,418,208 + -0.7
3,418,209 - +0.6
3,418,271 - +1.3

Or see this region's nucleotide sequence