Strain Fitness in Serratia liquefaciens MT49 around IAI46_16265

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16255 and IAI46_16260 are separated by 342 nucleotidesIAI46_16260 and IAI46_16265 are separated by 284 nucleotidesIAI46_16265 and IAI46_16270 are separated by 154 nucleotides IAI46_16255: IAI46_16255 - protein DsrB, at 3,409,284 to 3,409,487 _16255 IAI46_16260: IAI46_16260 - transcription antiterminator/RNA stability regulator CspE, at 3,409,830 to 3,410,042 _16260 IAI46_16265: IAI46_16265 - ion transporter, at 3,410,327 to 3,411,193 _16265 IAI46_16270: IAI46_16270 - hypothetical protein, at 3,411,348 to 3,411,716 _16270 Position (kb) 3410 3411 3412Strain fitness (log2 ratio) -2 -1 0 1at 3409.391 kb on - strand, within IAI46_16255at 3409.394 kb on + strand, within IAI46_16255at 3409.395 kb on - strand, within IAI46_16255at 3409.395 kb on - strand, within IAI46_16255at 3409.447 kb on - strand, within IAI46_16255at 3409.597 kb on + strandat 3409.703 kb on - strandat 3409.720 kb on + strandat 3409.721 kb on - strandat 3409.832 kb on - strandat 3409.832 kb on - strandat 3409.948 kb on - strand, within IAI46_16260at 3410.037 kb on - strandat 3410.037 kb on - strandat 3410.047 kb on - strandat 3410.062 kb on - strandat 3410.146 kb on - strandat 3410.150 kb on - strandat 3410.197 kb on - strandat 3410.209 kb on - strandat 3410.228 kb on + strandat 3410.229 kb on - strandat 3410.229 kb on - strandat 3410.469 kb on + strand, within IAI46_16265at 3410.470 kb on - strand, within IAI46_16265at 3410.470 kb on - strand, within IAI46_16265at 3410.580 kb on - strand, within IAI46_16265at 3410.580 kb on - strand, within IAI46_16265at 3410.607 kb on + strand, within IAI46_16265at 3410.608 kb on - strand, within IAI46_16265at 3410.608 kb on - strand, within IAI46_16265at 3410.612 kb on - strand, within IAI46_16265at 3410.658 kb on + strand, within IAI46_16265at 3410.659 kb on - strand, within IAI46_16265at 3410.659 kb on - strand, within IAI46_16265at 3410.770 kb on - strand, within IAI46_16265at 3410.770 kb on - strand, within IAI46_16265at 3410.770 kb on - strand, within IAI46_16265at 3410.845 kb on + strand, within IAI46_16265at 3410.868 kb on + strand, within IAI46_16265at 3410.868 kb on + strand, within IAI46_16265at 3410.868 kb on + strand, within IAI46_16265at 3410.869 kb on - strand, within IAI46_16265at 3410.919 kb on + strand, within IAI46_16265at 3410.969 kb on - strand, within IAI46_16265at 3410.980 kb on + strand, within IAI46_16265at 3410.981 kb on - strand, within IAI46_16265at 3410.981 kb on - strand, within IAI46_16265at 3410.985 kb on - strand, within IAI46_16265at 3411.010 kb on - strand, within IAI46_16265at 3411.151 kb on - strandat 3411.164 kb on + strandat 3411.193 kb on + strandat 3411.193 kb on + strandat 3411.206 kb on + strandat 3411.207 kb on - strandat 3411.208 kb on + strandat 3411.226 kb on - strandat 3411.226 kb on - strandat 3411.228 kb on - strandat 3411.228 kb on - strandat 3411.230 kb on + strandat 3411.231 kb on - strandat 3411.311 kb on + strandat 3411.313 kb on + strandat 3411.314 kb on - strandat 3411.314 kb on - strandat 3411.353 kb on + strandat 3411.353 kb on + strandat 3411.353 kb on + strandat 3411.354 kb on - strandat 3411.362 kb on + strandat 3411.394 kb on + strand, within IAI46_16270at 3411.395 kb on - strand, within IAI46_16270at 3411.398 kb on - strand, within IAI46_16270at 3411.432 kb on + strand, within IAI46_16270at 3411.687 kb on + strandat 3411.715 kb on - strandat 3411.726 kb on - strandat 3411.733 kb on - strandat 3411.740 kb on + strandat 3411.740 kb on + strandat 3411.761 kb on + strandat 3411.763 kb on + strandat 3411.764 kb on - strandat 3411.765 kb on + strandat 3411.765 kb on + strandat 3411.765 kb on + strandat 3411.766 kb on - strandat 3411.766 kb on - strandat 3411.840 kb on - strandat 3411.841 kb on + strandat 3411.841 kb on + strandat 3411.865 kb on - strandat 3411.884 kb on - strandat 3411.884 kb on - strandat 3411.906 kb on + strandat 3411.982 kb on + strandat 3411.983 kb on - strandat 3412.026 kb on + strandat 3412.172 kb on - strandat 3412.172 kb on - strandat 3412.173 kb on + strandat 3412.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,409,391 - IAI46_16255 0.52 -0.4
3,409,394 + IAI46_16255 0.54 +1.5
3,409,395 - IAI46_16255 0.54 +0.2
3,409,395 - IAI46_16255 0.54 -0.6
3,409,447 - IAI46_16255 0.80 +0.3
3,409,597 + +0.9
3,409,703 - +0.4
3,409,720 + +0.8
3,409,721 - -0.2
3,409,832 - +0.1
3,409,832 - +0.3
3,409,948 - IAI46_16260 0.55 -1.8
3,410,037 - -0.7
3,410,037 - +0.3
3,410,047 - +0.0
3,410,062 - -1.2
3,410,146 - +0.2
3,410,150 - -0.1
3,410,197 - +0.3
3,410,209 - +0.7
3,410,228 + -0.6
3,410,229 - -0.9
3,410,229 - -0.8
3,410,469 + IAI46_16265 0.16 +0.2
3,410,470 - IAI46_16265 0.16 -1.5
3,410,470 - IAI46_16265 0.16 -0.3
3,410,580 - IAI46_16265 0.29 +0.8
3,410,580 - IAI46_16265 0.29 -0.3
3,410,607 + IAI46_16265 0.32 +0.2
3,410,608 - IAI46_16265 0.32 +0.4
3,410,608 - IAI46_16265 0.32 -0.0
3,410,612 - IAI46_16265 0.33 +0.4
3,410,658 + IAI46_16265 0.38 +0.1
3,410,659 - IAI46_16265 0.38 +0.6
3,410,659 - IAI46_16265 0.38 -0.7
3,410,770 - IAI46_16265 0.51 -0.9
3,410,770 - IAI46_16265 0.51 +1.4
3,410,770 - IAI46_16265 0.51 +0.9
3,410,845 + IAI46_16265 0.60 +0.6
3,410,868 + IAI46_16265 0.62 -0.0
3,410,868 + IAI46_16265 0.62 +0.1
3,410,868 + IAI46_16265 0.62 -1.8
3,410,869 - IAI46_16265 0.63 -1.2
3,410,919 + IAI46_16265 0.68 +0.8
3,410,969 - IAI46_16265 0.74 +0.6
3,410,980 + IAI46_16265 0.75 -1.9
3,410,981 - IAI46_16265 0.75 -0.9
3,410,981 - IAI46_16265 0.75 +0.6
3,410,985 - IAI46_16265 0.76 +0.2
3,411,010 - IAI46_16265 0.79 +0.3
3,411,151 - -1.0
3,411,164 + +0.2
3,411,193 + +0.3
3,411,193 + -0.6
3,411,206 + -0.7
3,411,207 - -0.7
3,411,208 + -0.1
3,411,226 - -0.4
3,411,226 - +0.3
3,411,228 - +0.5
3,411,228 - +0.1
3,411,230 + -0.6
3,411,231 - +0.3
3,411,311 + -0.4
3,411,313 + +1.5
3,411,314 - +0.1
3,411,314 - -0.6
3,411,353 + -0.4
3,411,353 + -0.8
3,411,353 + -0.9
3,411,354 - +1.6
3,411,362 + +0.4
3,411,394 + IAI46_16270 0.12 -0.4
3,411,395 - IAI46_16270 0.13 +1.1
3,411,398 - IAI46_16270 0.14 -0.7
3,411,432 + IAI46_16270 0.23 +0.3
3,411,687 + +0.8
3,411,715 - +1.1
3,411,726 - -0.5
3,411,733 - -1.1
3,411,740 + +0.7
3,411,740 + -0.2
3,411,761 + +0.6
3,411,763 + +1.0
3,411,764 - +0.6
3,411,765 + -1.4
3,411,765 + -0.5
3,411,765 + -0.5
3,411,766 - -0.5
3,411,766 - -1.4
3,411,840 - +0.6
3,411,841 + +0.3
3,411,841 + +0.9
3,411,865 - +0.1
3,411,884 - +1.0
3,411,884 - +0.9
3,411,906 + -0.8
3,411,982 + -0.4
3,411,983 - +0.8
3,412,026 + -0.5
3,412,172 - -0.1
3,412,172 - +0.3
3,412,173 + +0.6
3,412,174 - +1.1

Or see this region's nucleotide sequence