Strain Fitness in Serratia liquefaciens MT49 around IAI46_16080

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_16075 and IAI46_16080 are separated by 44 nucleotidesIAI46_16080 and IAI46_16085 are separated by 98 nucleotides IAI46_16075: IAI46_16075 - NADP-dependent oxidoreductase, at 3,371,433 to 3,372,467 _16075 IAI46_16080: IAI46_16080 - pyroglutamyl-peptidase I, at 3,372,512 to 3,373,159 _16080 IAI46_16085: IAI46_16085 - LysR family transcriptional regulator, at 3,373,258 to 3,374,187 _16085 Position (kb) 3372 3373 3374Strain fitness (log2 ratio) -2 -1 0 1 2at 3371.558 kb on - strand, within IAI46_16075at 3371.558 kb on - strand, within IAI46_16075at 3371.571 kb on + strand, within IAI46_16075at 3371.590 kb on - strand, within IAI46_16075at 3371.722 kb on + strand, within IAI46_16075at 3371.722 kb on + strand, within IAI46_16075at 3371.723 kb on - strand, within IAI46_16075at 3371.745 kb on + strand, within IAI46_16075at 3371.746 kb on - strand, within IAI46_16075at 3371.770 kb on + strand, within IAI46_16075at 3371.771 kb on - strand, within IAI46_16075at 3371.845 kb on - strand, within IAI46_16075at 3371.846 kb on + strand, within IAI46_16075at 3371.846 kb on + strand, within IAI46_16075at 3371.846 kb on + strand, within IAI46_16075at 3371.847 kb on - strand, within IAI46_16075at 3371.997 kb on + strand, within IAI46_16075at 3372.161 kb on + strand, within IAI46_16075at 3372.191 kb on + strand, within IAI46_16075at 3372.191 kb on + strand, within IAI46_16075at 3372.191 kb on + strand, within IAI46_16075at 3372.191 kb on + strand, within IAI46_16075at 3372.191 kb on + strand, within IAI46_16075at 3372.192 kb on - strand, within IAI46_16075at 3372.192 kb on - strand, within IAI46_16075at 3372.192 kb on - strand, within IAI46_16075at 3372.250 kb on + strand, within IAI46_16075at 3372.266 kb on + strand, within IAI46_16075at 3372.267 kb on - strand, within IAI46_16075at 3372.466 kb on - strandat 3372.539 kb on + strandat 3372.540 kb on - strandat 3372.565 kb on + strandat 3372.565 kb on + strandat 3372.566 kb on - strandat 3372.575 kb on - strandat 3372.582 kb on - strand, within IAI46_16080at 3372.652 kb on - strand, within IAI46_16080at 3372.665 kb on - strand, within IAI46_16080at 3372.736 kb on + strand, within IAI46_16080at 3372.738 kb on + strand, within IAI46_16080at 3372.738 kb on + strand, within IAI46_16080at 3372.786 kb on - strand, within IAI46_16080at 3373.092 kb on - strand, within IAI46_16080at 3373.109 kb on - strandat 3373.233 kb on + strandat 3373.237 kb on + strandat 3373.237 kb on + strandat 3373.238 kb on - strandat 3373.241 kb on + strandat 3373.241 kb on + strandat 3373.241 kb on + strandat 3373.242 kb on - strandat 3373.242 kb on - strandat 3373.242 kb on - strandat 3373.242 kb on - strandat 3373.244 kb on - strandat 3373.244 kb on - strandat 3373.249 kb on - strandat 3373.700 kb on + strand, within IAI46_16085at 3373.700 kb on + strand, within IAI46_16085at 3373.701 kb on - strand, within IAI46_16085at 3373.773 kb on + strand, within IAI46_16085at 3373.774 kb on - strand, within IAI46_16085at 3373.805 kb on + strand, within IAI46_16085at 3373.835 kb on - strand, within IAI46_16085at 3373.994 kb on + strand, within IAI46_16085

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
remove
3,371,558 - IAI46_16075 0.12 +0.1
3,371,558 - IAI46_16075 0.12 +0.4
3,371,571 + IAI46_16075 0.13 -1.1
3,371,590 - IAI46_16075 0.15 +0.4
3,371,722 + IAI46_16075 0.28 +0.4
3,371,722 + IAI46_16075 0.28 -1.3
3,371,723 - IAI46_16075 0.28 -0.6
3,371,745 + IAI46_16075 0.30 +0.3
3,371,746 - IAI46_16075 0.30 +0.4
3,371,770 + IAI46_16075 0.33 +0.8
3,371,771 - IAI46_16075 0.33 +1.3
3,371,845 - IAI46_16075 0.40 +1.1
3,371,846 + IAI46_16075 0.40 +0.6
3,371,846 + IAI46_16075 0.40 +1.1
3,371,846 + IAI46_16075 0.40 -0.6
3,371,847 - IAI46_16075 0.40 -2.1
3,371,997 + IAI46_16075 0.54 -1.9
3,372,161 + IAI46_16075 0.70 +0.3
3,372,191 + IAI46_16075 0.73 +1.7
3,372,191 + IAI46_16075 0.73 +1.9
3,372,191 + IAI46_16075 0.73 +1.9
3,372,191 + IAI46_16075 0.73 +1.8
3,372,191 + IAI46_16075 0.73 +0.7
3,372,192 - IAI46_16075 0.73 -0.2
3,372,192 - IAI46_16075 0.73 +0.5
3,372,192 - IAI46_16075 0.73 -0.8
3,372,250 + IAI46_16075 0.79 +1.7
3,372,266 + IAI46_16075 0.80 +0.2
3,372,267 - IAI46_16075 0.81 -0.9
3,372,466 - -1.7
3,372,539 + +0.8
3,372,540 - +0.5
3,372,565 + +0.6
3,372,565 + -0.9
3,372,566 - +0.6
3,372,575 - +0.2
3,372,582 - IAI46_16080 0.11 +0.2
3,372,652 - IAI46_16080 0.22 +0.2
3,372,665 - IAI46_16080 0.24 +1.3
3,372,736 + IAI46_16080 0.35 +1.3
3,372,738 + IAI46_16080 0.35 +0.1
3,372,738 + IAI46_16080 0.35 +0.3
3,372,786 - IAI46_16080 0.42 +0.2
3,373,092 - IAI46_16080 0.90 +0.7
3,373,109 - +0.7
3,373,233 + +0.6
3,373,237 + +0.5
3,373,237 + +0.8
3,373,238 - +1.4
3,373,241 + +0.5
3,373,241 + -0.7
3,373,241 + +0.1
3,373,242 - +0.7
3,373,242 - -0.8
3,373,242 - +0.7
3,373,242 - -0.0
3,373,244 - -1.2
3,373,244 - -0.8
3,373,249 - -0.7
3,373,700 + IAI46_16085 0.48 +0.3
3,373,700 + IAI46_16085 0.48 +0.7
3,373,701 - IAI46_16085 0.48 +0.5
3,373,773 + IAI46_16085 0.55 -0.1
3,373,774 - IAI46_16085 0.55 -0.7
3,373,805 + IAI46_16085 0.59 -0.4
3,373,835 - IAI46_16085 0.62 -0.0
3,373,994 + IAI46_16085 0.79 -0.8

Or see this region's nucleotide sequence