Strain Fitness in Serratia liquefaciens MT49 around IAI46_14810

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14805 and IAI46_14810 are separated by 575 nucleotidesIAI46_14810 and IAI46_14815 are separated by 55 nucleotidesIAI46_14815 and IAI46_14820 are separated by 15 nucleotides IAI46_14805: IAI46_14805 - TerC family protein, at 3,136,015 to 3,137,559 _14805 IAI46_14810: IAI46_14810 - PTS mannose transporter subunit IIAB, at 3,138,135 to 3,139,106 _14810 IAI46_14815: IAI46_14815 - PTS mannose/fructose/sorbose transporter subunit IIC, at 3,139,162 to 3,139,962 _14815 IAI46_14820: IAI46_14820 - PTS mannose transporter subunit IID, at 3,139,978 to 3,140,820 _14820 Position (kb) 3138 3139 3140Strain fitness (log2 ratio) -1 0 1at 3137.391 kb on + strand, within IAI46_14805at 3137.522 kb on - strandat 3137.660 kb on + strandat 3137.661 kb on - strandat 3137.661 kb on - strandat 3137.663 kb on + strandat 3137.782 kb on - strandat 3137.805 kb on - strandat 3138.043 kb on + strandat 3138.044 kb on - strandat 3138.049 kb on - strandat 3138.089 kb on - strandat 3138.129 kb on + strandat 3138.142 kb on + strandat 3138.142 kb on + strandat 3138.146 kb on + strandat 3138.146 kb on + strandat 3138.147 kb on - strandat 3138.147 kb on - strandat 3138.149 kb on + strandat 3138.205 kb on + strandat 3138.205 kb on + strandat 3138.205 kb on + strandat 3138.205 kb on + strandat 3138.238 kb on - strand, within IAI46_14810at 3138.280 kb on - strand, within IAI46_14810at 3138.438 kb on + strand, within IAI46_14810at 3138.546 kb on - strand, within IAI46_14810at 3138.930 kb on - strand, within IAI46_14810at 3139.120 kb on + strandat 3139.124 kb on + strandat 3139.187 kb on + strandat 3139.194 kb on - strandat 3139.194 kb on - strandat 3139.197 kb on + strandat 3139.270 kb on - strand, within IAI46_14815at 3139.270 kb on - strand, within IAI46_14815at 3139.284 kb on + strand, within IAI46_14815at 3139.398 kb on + strand, within IAI46_14815at 3139.611 kb on + strand, within IAI46_14815at 3139.612 kb on - strand, within IAI46_14815at 3139.639 kb on - strand, within IAI46_14815at 3139.873 kb on + strand, within IAI46_14815at 3139.873 kb on + strand, within IAI46_14815at 3139.966 kb on + strandat 3139.966 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,137,391 + IAI46_14805 0.89 +1.6
3,137,522 - -0.0
3,137,660 + +0.0
3,137,661 - -1.4
3,137,661 - +0.6
3,137,663 + +0.1
3,137,782 - +0.5
3,137,805 - -0.9
3,138,043 + -0.5
3,138,044 - -0.5
3,138,049 - +0.6
3,138,089 - -0.4
3,138,129 + -0.5
3,138,142 + +0.3
3,138,142 + +0.0
3,138,146 + +0.0
3,138,146 + -0.4
3,138,147 - +0.5
3,138,147 - +1.0
3,138,149 + +0.0
3,138,205 + +0.5
3,138,205 + +0.8
3,138,205 + +0.9
3,138,205 + -0.1
3,138,238 - IAI46_14810 0.11 +0.2
3,138,280 - IAI46_14810 0.15 +0.3
3,138,438 + IAI46_14810 0.31 +0.6
3,138,546 - IAI46_14810 0.42 +0.6
3,138,930 - IAI46_14810 0.82 -0.8
3,139,120 + +0.4
3,139,124 + +0.5
3,139,187 + -1.3
3,139,194 - +0.7
3,139,194 - -0.3
3,139,197 + +0.1
3,139,270 - IAI46_14815 0.13 -1.3
3,139,270 - IAI46_14815 0.13 +0.6
3,139,284 + IAI46_14815 0.15 +0.8
3,139,398 + IAI46_14815 0.29 +1.2
3,139,611 + IAI46_14815 0.56 +0.9
3,139,612 - IAI46_14815 0.56 +0.6
3,139,639 - IAI46_14815 0.60 -0.3
3,139,873 + IAI46_14815 0.89 +0.2
3,139,873 + IAI46_14815 0.89 -0.9
3,139,966 + +0.9
3,139,966 + -1.0

Or see this region's nucleotide sequence