Strain Fitness in Serratia liquefaciens MT49 around IAI46_14310

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14305 and IAI46_14310 overlap by 1 nucleotidesIAI46_14310 and IAI46_14315 overlap by 1 nucleotides IAI46_14305: IAI46_14305 - DNA topoisomerase III, at 3,033,934 to 3,035,859 _14305 IAI46_14310: IAI46_14310 - tRNA 2-selenouridine(34) synthase MnmH, at 3,035,859 to 3,036,977 _14310 IAI46_14315: IAI46_14315 - selenide, water dikinase SelD, at 3,036,977 to 3,038,020 _14315 Position (kb) 3035 3036 3037Strain fitness (log2 ratio) -2 -1 0 1 2at 3035.025 kb on - strand, within IAI46_14305at 3035.025 kb on - strand, within IAI46_14305at 3035.114 kb on + strand, within IAI46_14305at 3035.321 kb on + strand, within IAI46_14305at 3035.321 kb on + strand, within IAI46_14305at 3035.321 kb on + strand, within IAI46_14305at 3035.406 kb on + strand, within IAI46_14305at 3035.423 kb on - strand, within IAI46_14305at 3035.700 kb on - strandat 3035.726 kb on - strandat 3035.861 kb on - strandat 3035.881 kb on + strandat 3035.881 kb on + strandat 3035.881 kb on + strandat 3035.881 kb on + strandat 3035.962 kb on + strandat 3035.962 kb on + strandat 3035.962 kb on + strandat 3035.977 kb on + strand, within IAI46_14310at 3035.978 kb on - strand, within IAI46_14310at 3036.035 kb on - strand, within IAI46_14310at 3036.046 kb on - strand, within IAI46_14310at 3036.130 kb on + strand, within IAI46_14310at 3036.200 kb on + strand, within IAI46_14310at 3036.201 kb on - strand, within IAI46_14310at 3036.201 kb on - strand, within IAI46_14310at 3036.202 kb on + strand, within IAI46_14310at 3036.203 kb on - strand, within IAI46_14310at 3036.373 kb on - strand, within IAI46_14310at 3036.606 kb on - strand, within IAI46_14310at 3036.689 kb on - strand, within IAI46_14310at 3036.689 kb on - strand, within IAI46_14310at 3036.955 kb on - strandat 3037.016 kb on - strandat 3037.016 kb on - strandat 3037.037 kb on + strandat 3037.038 kb on - strandat 3037.179 kb on + strand, within IAI46_14315at 3037.444 kb on + strand, within IAI46_14315at 3037.595 kb on + strand, within IAI46_14315at 3037.597 kb on + strand, within IAI46_14315at 3037.598 kb on - strand, within IAI46_14315at 3037.598 kb on - strand, within IAI46_14315at 3037.744 kb on - strand, within IAI46_14315at 3037.811 kb on - strand, within IAI46_14315at 3037.857 kb on + strand, within IAI46_14315at 3037.857 kb on + strand, within IAI46_14315at 3037.937 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,035,025 - IAI46_14305 0.57 +0.8
3,035,025 - IAI46_14305 0.57 +0.6
3,035,114 + IAI46_14305 0.61 -1.1
3,035,321 + IAI46_14305 0.72 -1.7
3,035,321 + IAI46_14305 0.72 +1.1
3,035,321 + IAI46_14305 0.72 -0.9
3,035,406 + IAI46_14305 0.76 +1.2
3,035,423 - IAI46_14305 0.77 +0.6
3,035,700 - -0.4
3,035,726 - +0.3
3,035,861 - +0.6
3,035,881 + -2.1
3,035,881 + -0.0
3,035,881 + -0.0
3,035,881 + -1.0
3,035,962 + +1.6
3,035,962 + -0.5
3,035,962 + +0.7
3,035,977 + IAI46_14310 0.11 +0.2
3,035,978 - IAI46_14310 0.11 -1.0
3,036,035 - IAI46_14310 0.16 +0.9
3,036,046 - IAI46_14310 0.17 +1.2
3,036,130 + IAI46_14310 0.24 +0.4
3,036,200 + IAI46_14310 0.30 +0.6
3,036,201 - IAI46_14310 0.31 -0.5
3,036,201 - IAI46_14310 0.31 -0.4
3,036,202 + IAI46_14310 0.31 -1.4
3,036,203 - IAI46_14310 0.31 +0.1
3,036,373 - IAI46_14310 0.46 -0.8
3,036,606 - IAI46_14310 0.67 +0.3
3,036,689 - IAI46_14310 0.74 -1.6
3,036,689 - IAI46_14310 0.74 +0.3
3,036,955 - +0.6
3,037,016 - +0.7
3,037,016 - +0.6
3,037,037 + +0.7
3,037,038 - +1.0
3,037,179 + IAI46_14315 0.19 +0.8
3,037,444 + IAI46_14315 0.45 -0.8
3,037,595 + IAI46_14315 0.59 -0.1
3,037,597 + IAI46_14315 0.59 -0.4
3,037,598 - IAI46_14315 0.59 +0.3
3,037,598 - IAI46_14315 0.59 +0.6
3,037,744 - IAI46_14315 0.73 +1.8
3,037,811 - IAI46_14315 0.80 -0.1
3,037,857 + IAI46_14315 0.84 +1.6
3,037,857 + IAI46_14315 0.84 -0.2
3,037,937 - -0.1

Or see this region's nucleotide sequence