Strain Fitness in Serratia liquefaciens MT49 around IAI46_14015

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14005 and IAI46_14010 are separated by 118 nucleotidesIAI46_14010 and IAI46_14015 are separated by 48 nucleotidesIAI46_14015 and IAI46_14020 are separated by 374 nucleotides IAI46_14005: IAI46_14005 - hypothetical protein, at 2,974,881 to 2,975,240 _14005 IAI46_14010: IAI46_14010 - threonylcarbamoyl-AMP synthase, at 2,975,359 to 2,975,979 _14010 IAI46_14015: IAI46_14015 - PHP domain-containing protein, at 2,976,028 to 2,976,915 _14015 IAI46_14020: IAI46_14020 - anthranilate synthase component 1, at 2,977,290 to 2,978,849 _14020 Position (kb) 2976 2977Strain fitness (log2 ratio) -2 -1 0 1 2at 2975.030 kb on + strand, within IAI46_14005at 2975.055 kb on - strand, within IAI46_14005at 2975.075 kb on - strand, within IAI46_14005at 2975.075 kb on - strand, within IAI46_14005at 2975.075 kb on - strand, within IAI46_14005at 2975.081 kb on + strand, within IAI46_14005at 2975.208 kb on + strandat 2975.209 kb on - strandat 2975.257 kb on + strandat 2975.257 kb on + strandat 2975.258 kb on - strandat 2975.258 kb on - strandat 2975.279 kb on - strandat 2975.349 kb on + strandat 2975.349 kb on + strandat 2975.350 kb on - strandat 2975.353 kb on + strandat 2975.353 kb on + strandat 2975.354 kb on - strandat 2975.691 kb on - strand, within IAI46_14010at 2975.691 kb on - strand, within IAI46_14010at 2975.742 kb on - strand, within IAI46_14010at 2975.742 kb on - strand, within IAI46_14010at 2975.748 kb on - strand, within IAI46_14010at 2975.752 kb on - strand, within IAI46_14010at 2975.752 kb on - strand, within IAI46_14010at 2975.867 kb on + strand, within IAI46_14010at 2976.413 kb on + strand, within IAI46_14015at 2976.414 kb on - strand, within IAI46_14015at 2976.435 kb on + strand, within IAI46_14015at 2976.436 kb on - strand, within IAI46_14015at 2976.654 kb on + strand, within IAI46_14015at 2976.655 kb on - strand, within IAI46_14015at 2976.794 kb on - strand, within IAI46_14015at 2976.876 kb on - strandat 2976.945 kb on + strandat 2976.945 kb on + strandat 2976.945 kb on + strandat 2976.946 kb on - strandat 2976.946 kb on - strandat 2976.980 kb on - strandat 2977.062 kb on - strandat 2977.119 kb on + strandat 2977.120 kb on - strandat 2977.174 kb on - strandat 2977.206 kb on - strandat 2977.206 kb on - strandat 2977.311 kb on - strandat 2977.311 kb on - strandat 2977.466 kb on + strand, within IAI46_14020at 2977.485 kb on - strand, within IAI46_14020at 2977.678 kb on + strand, within IAI46_14020at 2977.740 kb on + strand, within IAI46_14020at 2977.741 kb on - strand, within IAI46_14020

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,975,030 + IAI46_14005 0.41 +0.4
2,975,055 - IAI46_14005 0.48 -1.3
2,975,075 - IAI46_14005 0.54 +0.7
2,975,075 - IAI46_14005 0.54 -0.2
2,975,075 - IAI46_14005 0.54 -0.4
2,975,081 + IAI46_14005 0.56 +0.6
2,975,208 + +0.1
2,975,209 - -0.8
2,975,257 + +0.2
2,975,257 + -0.0
2,975,258 - -0.5
2,975,258 - +0.9
2,975,279 - +0.9
2,975,349 + +0.3
2,975,349 + -0.2
2,975,350 - -0.2
2,975,353 + -1.2
2,975,353 + +1.9
2,975,354 - -0.5
2,975,691 - IAI46_14010 0.53 +0.5
2,975,691 - IAI46_14010 0.53 +1.2
2,975,742 - IAI46_14010 0.62 -0.6
2,975,742 - IAI46_14010 0.62 +0.4
2,975,748 - IAI46_14010 0.63 +0.7
2,975,752 - IAI46_14010 0.63 -0.3
2,975,752 - IAI46_14010 0.63 +0.6
2,975,867 + IAI46_14010 0.82 +1.6
2,976,413 + IAI46_14015 0.43 -0.6
2,976,414 - IAI46_14015 0.43 +0.5
2,976,435 + IAI46_14015 0.46 +0.2
2,976,436 - IAI46_14015 0.46 -0.8
2,976,654 + IAI46_14015 0.70 -0.2
2,976,655 - IAI46_14015 0.71 +0.1
2,976,794 - IAI46_14015 0.86 -2.0
2,976,876 - +1.3
2,976,945 + +0.8
2,976,945 + -0.4
2,976,945 + -0.2
2,976,946 - +0.0
2,976,946 - -0.0
2,976,980 - -0.1
2,977,062 - +0.6
2,977,119 + +0.2
2,977,120 - +0.4
2,977,174 - +1.0
2,977,206 - +0.2
2,977,206 - +0.3
2,977,311 - +2.0
2,977,311 - +0.6
2,977,466 + IAI46_14020 0.11 -0.3
2,977,485 - IAI46_14020 0.12 +1.1
2,977,678 + IAI46_14020 0.25 -0.0
2,977,740 + IAI46_14020 0.29 -1.3
2,977,741 - IAI46_14020 0.29 -1.2

Or see this region's nucleotide sequence