Strain Fitness in Serratia liquefaciens MT49 around IAI46_13065

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13060 and IAI46_13065 are separated by 141 nucleotidesIAI46_13065 and IAI46_13070 are separated by 0 nucleotidesIAI46_13070 and IAI46_13075 are separated by 102 nucleotides IAI46_13060: IAI46_13060 - sugar phosphate isomerase/epimerase, at 2,787,698 to 2,788,753 _13060 IAI46_13065: IAI46_13065 - TetR/AcrR family transcriptional regulator, at 2,788,895 to 2,789,479 _13065 IAI46_13070: IAI46_13070 - cupin domain-containing protein, at 2,789,480 to 2,789,782 _13070 IAI46_13075: IAI46_13075 - KUP/HAK/KT family potassium transporter, at 2,789,885 to 2,791,765 _13075 Position (kb) 2788 2789 2790Strain fitness (log2 ratio) -2 -1 0 1at 2787.981 kb on + strand, within IAI46_13060at 2788.050 kb on + strand, within IAI46_13060at 2788.062 kb on + strand, within IAI46_13060at 2788.062 kb on + strand, within IAI46_13060at 2788.063 kb on - strand, within IAI46_13060at 2788.072 kb on - strand, within IAI46_13060at 2788.112 kb on + strand, within IAI46_13060at 2788.112 kb on + strand, within IAI46_13060at 2788.314 kb on - strand, within IAI46_13060at 2788.317 kb on + strand, within IAI46_13060at 2788.476 kb on + strand, within IAI46_13060at 2788.575 kb on + strand, within IAI46_13060at 2788.575 kb on + strand, within IAI46_13060at 2788.757 kb on - strandat 2788.839 kb on - strandat 2788.839 kb on - strandat 2788.844 kb on - strandat 2789.302 kb on + strand, within IAI46_13065at 2789.644 kb on - strand, within IAI46_13070at 2789.644 kb on - strand, within IAI46_13070at 2789.695 kb on + strand, within IAI46_13070at 2789.720 kb on + strand, within IAI46_13070at 2789.775 kb on - strandat 2789.783 kb on - strandat 2789.783 kb on - strandat 2789.866 kb on + strandat 2789.872 kb on - strandat 2789.934 kb on + strandat 2790.052 kb on - strandat 2790.056 kb on - strandat 2790.056 kb on - strandat 2790.101 kb on + strand, within IAI46_13075at 2790.116 kb on - strand, within IAI46_13075at 2790.353 kb on - strand, within IAI46_13075at 2790.444 kb on - strand, within IAI46_13075

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,787,981 + IAI46_13060 0.27 +0.1
2,788,050 + IAI46_13060 0.33 +0.7
2,788,062 + IAI46_13060 0.34 +0.7
2,788,062 + IAI46_13060 0.34 -2.7
2,788,063 - IAI46_13060 0.35 -0.0
2,788,072 - IAI46_13060 0.35 +0.9
2,788,112 + IAI46_13060 0.39 -0.8
2,788,112 + IAI46_13060 0.39 -0.7
2,788,314 - IAI46_13060 0.58 +0.5
2,788,317 + IAI46_13060 0.59 +0.7
2,788,476 + IAI46_13060 0.74 -0.3
2,788,575 + IAI46_13060 0.83 +0.1
2,788,575 + IAI46_13060 0.83 +0.2
2,788,757 - -0.7
2,788,839 - +0.1
2,788,839 - -0.3
2,788,844 - +0.3
2,789,302 + IAI46_13065 0.70 +0.7
2,789,644 - IAI46_13070 0.54 +0.0
2,789,644 - IAI46_13070 0.54 +1.1
2,789,695 + IAI46_13070 0.71 -0.9
2,789,720 + IAI46_13070 0.79 +0.8
2,789,775 - -0.8
2,789,783 - -0.4
2,789,783 - +0.4
2,789,866 + +1.0
2,789,872 - -0.6
2,789,934 + +0.4
2,790,052 - -0.1
2,790,056 - +0.6
2,790,056 - +0.6
2,790,101 + IAI46_13075 0.11 +0.5
2,790,116 - IAI46_13075 0.12 +0.0
2,790,353 - IAI46_13075 0.25 +0.7
2,790,444 - IAI46_13075 0.30 +0.9

Or see this region's nucleotide sequence