Strain Fitness in Serratia liquefaciens MT49 around IAI46_13040

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13035 and IAI46_13040 are separated by 105 nucleotidesIAI46_13040 and IAI46_13045 are separated by 213 nucleotides IAI46_13035: IAI46_13035 - DMT family transporter, at 2,782,277 to 2,783,242 _13035 IAI46_13040: IAI46_13040 - AraC family transcriptional regulator, at 2,783,348 to 2,784,175 _13040 IAI46_13045: IAI46_13045 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,784,389 to 2,785,822 _13045 Position (kb) 2783 2784 2785Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2782.403 kb on - strand, within IAI46_13035at 2782.403 kb on - strand, within IAI46_13035at 2782.411 kb on - strand, within IAI46_13035at 2782.411 kb on - strand, within IAI46_13035at 2782.411 kb on - strand, within IAI46_13035at 2782.411 kb on - strand, within IAI46_13035at 2782.547 kb on + strand, within IAI46_13035at 2782.547 kb on + strand, within IAI46_13035at 2782.548 kb on - strand, within IAI46_13035at 2782.548 kb on - strand, within IAI46_13035at 2782.621 kb on - strand, within IAI46_13035at 2782.714 kb on + strand, within IAI46_13035at 2782.775 kb on - strand, within IAI46_13035at 2782.960 kb on + strand, within IAI46_13035at 2783.007 kb on + strand, within IAI46_13035at 2783.007 kb on + strand, within IAI46_13035at 2783.171 kb on + strandat 2783.243 kb on - strandat 2783.288 kb on - strandat 2783.328 kb on + strandat 2783.611 kb on + strand, within IAI46_13040at 2784.070 kb on - strand, within IAI46_13040at 2784.078 kb on - strand, within IAI46_13040at 2784.215 kb on - strandat 2784.237 kb on + strandat 2784.281 kb on - strandat 2784.411 kb on - strandat 2784.829 kb on + strand, within IAI46_13045at 2784.996 kb on + strand, within IAI46_13045at 2785.026 kb on - strand, within IAI46_13045

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,782,403 - IAI46_13035 0.13 -1.5
2,782,403 - IAI46_13035 0.13 -0.7
2,782,411 - IAI46_13035 0.14 +0.3
2,782,411 - IAI46_13035 0.14 +0.1
2,782,411 - IAI46_13035 0.14 +0.0
2,782,411 - IAI46_13035 0.14 -0.7
2,782,547 + IAI46_13035 0.28 -2.2
2,782,547 + IAI46_13035 0.28 -0.3
2,782,548 - IAI46_13035 0.28 -1.5
2,782,548 - IAI46_13035 0.28 +0.1
2,782,621 - IAI46_13035 0.36 -1.3
2,782,714 + IAI46_13035 0.45 +1.1
2,782,775 - IAI46_13035 0.52 +0.2
2,782,960 + IAI46_13035 0.71 +0.5
2,783,007 + IAI46_13035 0.76 +0.8
2,783,007 + IAI46_13035 0.76 -0.3
2,783,171 + -0.2
2,783,243 - -1.1
2,783,288 - +1.8
2,783,328 + +0.1
2,783,611 + IAI46_13040 0.32 -0.3
2,784,070 - IAI46_13040 0.87 +0.9
2,784,078 - IAI46_13040 0.88 +0.3
2,784,215 - +0.7
2,784,237 + +0.3
2,784,281 - -0.5
2,784,411 - -0.0
2,784,829 + IAI46_13045 0.31 -0.6
2,784,996 + IAI46_13045 0.42 +0.6
2,785,026 - IAI46_13045 0.44 -2.9

Or see this region's nucleotide sequence