Strain Fitness in Serratia liquefaciens MT49 around IAI46_13020

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13015 and IAI46_13020 are separated by 34 nucleotidesIAI46_13020 and IAI46_13025 overlap by 4 nucleotides IAI46_13015: IAI46_13015 - iron ABC transporter substrate-binding protein, at 2,776,199 to 2,777,215 _13015 IAI46_13020: IAI46_13020 - iron ABC transporter permease, at 2,777,250 to 2,778,833 _13020 IAI46_13025: IAI46_13025 - ABC transporter ATP-binding protein, at 2,778,830 to 2,779,867 _13025 Position (kb) 2777 2778 2779Strain fitness (log2 ratio) -1 0 1at 2776.301 kb on - strand, within IAI46_13015at 2776.304 kb on + strand, within IAI46_13015at 2776.384 kb on + strand, within IAI46_13015at 2776.385 kb on - strand, within IAI46_13015at 2776.605 kb on - strand, within IAI46_13015at 2776.862 kb on + strand, within IAI46_13015at 2776.862 kb on + strand, within IAI46_13015at 2776.863 kb on - strand, within IAI46_13015at 2776.863 kb on - strand, within IAI46_13015at 2776.868 kb on + strand, within IAI46_13015at 2776.868 kb on + strand, within IAI46_13015at 2776.868 kb on + strand, within IAI46_13015at 2776.868 kb on + strand, within IAI46_13015at 2776.868 kb on + strand, within IAI46_13015at 2776.926 kb on - strand, within IAI46_13015at 2777.147 kb on - strandat 2777.249 kb on + strandat 2777.260 kb on + strandat 2777.261 kb on - strandat 2777.390 kb on + strandat 2777.465 kb on + strand, within IAI46_13020at 2777.466 kb on - strand, within IAI46_13020at 2777.468 kb on + strand, within IAI46_13020at 2777.468 kb on + strand, within IAI46_13020at 2777.544 kb on - strand, within IAI46_13020at 2777.544 kb on - strand, within IAI46_13020at 2777.565 kb on - strand, within IAI46_13020at 2777.689 kb on - strand, within IAI46_13020at 2777.700 kb on - strand, within IAI46_13020at 2777.881 kb on - strand, within IAI46_13020at 2777.960 kb on + strand, within IAI46_13020at 2777.961 kb on - strand, within IAI46_13020at 2778.036 kb on + strand, within IAI46_13020at 2778.036 kb on + strand, within IAI46_13020at 2778.278 kb on - strand, within IAI46_13020at 2778.328 kb on - strand, within IAI46_13020at 2778.351 kb on + strand, within IAI46_13020at 2778.351 kb on + strand, within IAI46_13020at 2778.429 kb on + strand, within IAI46_13020at 2778.444 kb on - strand, within IAI46_13020at 2778.459 kb on + strand, within IAI46_13020at 2778.463 kb on + strand, within IAI46_13020at 2778.474 kb on - strand, within IAI46_13020at 2778.698 kb on - strandat 2778.698 kb on - strandat 2778.735 kb on + strandat 2778.764 kb on + strandat 2778.775 kb on + strandat 2778.801 kb on + strandat 2778.801 kb on + strandat 2778.829 kb on + strandat 2778.846 kb on + strandat 2778.859 kb on + strandat 2778.867 kb on - strandat 2779.171 kb on + strand, within IAI46_13025at 2779.499 kb on + strand, within IAI46_13025at 2779.503 kb on + strand, within IAI46_13025at 2779.504 kb on - strand, within IAI46_13025

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,776,301 - IAI46_13015 0.10 -0.1
2,776,304 + IAI46_13015 0.10 +0.8
2,776,384 + IAI46_13015 0.18 -0.5
2,776,385 - IAI46_13015 0.18 -0.1
2,776,605 - IAI46_13015 0.40 -0.8
2,776,862 + IAI46_13015 0.65 -0.5
2,776,862 + IAI46_13015 0.65 -1.5
2,776,863 - IAI46_13015 0.65 -0.1
2,776,863 - IAI46_13015 0.65 -0.5
2,776,868 + IAI46_13015 0.66 +1.1
2,776,868 + IAI46_13015 0.66 -0.7
2,776,868 + IAI46_13015 0.66 -0.2
2,776,868 + IAI46_13015 0.66 +1.5
2,776,868 + IAI46_13015 0.66 +0.9
2,776,926 - IAI46_13015 0.71 -0.7
2,777,147 - +0.1
2,777,249 + -0.6
2,777,260 + +0.9
2,777,261 - +1.2
2,777,390 + +0.6
2,777,465 + IAI46_13020 0.14 -1.0
2,777,466 - IAI46_13020 0.14 -0.9
2,777,468 + IAI46_13020 0.14 +0.7
2,777,468 + IAI46_13020 0.14 +1.2
2,777,544 - IAI46_13020 0.19 -0.7
2,777,544 - IAI46_13020 0.19 +1.1
2,777,565 - IAI46_13020 0.20 +1.1
2,777,689 - IAI46_13020 0.28 +1.3
2,777,700 - IAI46_13020 0.28 -0.1
2,777,881 - IAI46_13020 0.40 -0.5
2,777,960 + IAI46_13020 0.45 +0.9
2,777,961 - IAI46_13020 0.45 -0.4
2,778,036 + IAI46_13020 0.50 +0.5
2,778,036 + IAI46_13020 0.50 +0.5
2,778,278 - IAI46_13020 0.65 +1.0
2,778,328 - IAI46_13020 0.68 -0.5
2,778,351 + IAI46_13020 0.70 +1.5
2,778,351 + IAI46_13020 0.70 +0.3
2,778,429 + IAI46_13020 0.74 -0.8
2,778,444 - IAI46_13020 0.75 +0.7
2,778,459 + IAI46_13020 0.76 +1.0
2,778,463 + IAI46_13020 0.77 +0.3
2,778,474 - IAI46_13020 0.77 -0.9
2,778,698 - +0.6
2,778,698 - +0.8
2,778,735 + +0.6
2,778,764 + +1.1
2,778,775 + -0.6
2,778,801 + +0.5
2,778,801 + +0.2
2,778,829 + -0.1
2,778,846 + -0.6
2,778,859 + -0.5
2,778,867 - +0.0
2,779,171 + IAI46_13025 0.33 -0.0
2,779,499 + IAI46_13025 0.64 -0.1
2,779,503 + IAI46_13025 0.65 +0.4
2,779,504 - IAI46_13025 0.65 +0.2

Or see this region's nucleotide sequence