Strain Fitness in Serratia liquefaciens MT49 around IAI46_12275

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12265 and IAI46_12270 are separated by 27 nucleotidesIAI46_12270 and IAI46_12275 are separated by 55 nucleotidesIAI46_12275 and IAI46_12280 overlap by 1 nucleotidesIAI46_12280 and IAI46_12285 are separated by 6 nucleotides IAI46_12265: IAI46_12265 - amidinotransferase, at 2,602,164 to 2,602,925 _12265 IAI46_12270: IAI46_12270 - ABC transporter substrate-binding protein, at 2,602,953 to 2,603,726 _12270 IAI46_12275: IAI46_12275 - ABC transporter permease subunit, at 2,603,782 to 2,604,471 _12275 IAI46_12280: IAI46_12280 - ABC transporter permease subunit, at 2,604,471 to 2,605,193 _12280 IAI46_12285: IAI46_12285 - Lrp/AsnC family transcriptional regulator, at 2,605,200 to 2,605,655 _12285 Position (kb) 2603 2604 2605Strain fitness (log2 ratio) -1 0 1at 2602.790 kb on + strand, within IAI46_12265at 2602.790 kb on + strand, within IAI46_12265at 2602.791 kb on - strand, within IAI46_12265at 2603.103 kb on - strand, within IAI46_12270at 2603.444 kb on + strand, within IAI46_12270at 2603.477 kb on + strand, within IAI46_12270at 2603.498 kb on + strand, within IAI46_12270at 2603.520 kb on - strand, within IAI46_12270at 2603.676 kb on + strandat 2603.716 kb on - strandat 2603.724 kb on + strandat 2603.767 kb on + strandat 2603.767 kb on + strandat 2603.794 kb on + strandat 2603.794 kb on + strandat 2603.973 kb on + strand, within IAI46_12275at 2603.974 kb on - strand, within IAI46_12275at 2604.060 kb on + strand, within IAI46_12275at 2604.060 kb on + strand, within IAI46_12275at 2604.060 kb on + strand, within IAI46_12275at 2604.101 kb on - strand, within IAI46_12275at 2604.103 kb on + strand, within IAI46_12275at 2604.191 kb on + strand, within IAI46_12275at 2604.383 kb on - strand, within IAI46_12275at 2604.383 kb on - strand, within IAI46_12275at 2604.383 kb on - strand, within IAI46_12275at 2604.384 kb on + strand, within IAI46_12275at 2604.384 kb on + strand, within IAI46_12275at 2604.486 kb on - strandat 2604.586 kb on + strand, within IAI46_12280at 2604.831 kb on + strand, within IAI46_12280at 2604.832 kb on - strand, within IAI46_12280at 2605.075 kb on - strand, within IAI46_12280at 2605.113 kb on + strand, within IAI46_12280at 2605.179 kb on - strandat 2605.180 kb on + strandat 2605.180 kb on + strandat 2605.181 kb on - strandat 2605.181 kb on - strandat 2605.181 kb on - strandat 2605.376 kb on + strand, within IAI46_12285at 2605.380 kb on - strand, within IAI46_12285

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,602,790 + IAI46_12265 0.82 -0.2
2,602,790 + IAI46_12265 0.82 +0.1
2,602,791 - IAI46_12265 0.82 +0.0
2,603,103 - IAI46_12270 0.19 +0.1
2,603,444 + IAI46_12270 0.63 +0.0
2,603,477 + IAI46_12270 0.68 +0.8
2,603,498 + IAI46_12270 0.70 +1.4
2,603,520 - IAI46_12270 0.73 +0.1
2,603,676 + -0.2
2,603,716 - +0.4
2,603,724 + -0.4
2,603,767 + -0.2
2,603,767 + -0.2
2,603,794 + +0.0
2,603,794 + +1.7
2,603,973 + IAI46_12275 0.28 +0.4
2,603,974 - IAI46_12275 0.28 -0.9
2,604,060 + IAI46_12275 0.40 +0.0
2,604,060 + IAI46_12275 0.40 +0.2
2,604,060 + IAI46_12275 0.40 -1.7
2,604,101 - IAI46_12275 0.46 +0.7
2,604,103 + IAI46_12275 0.47 -0.5
2,604,191 + IAI46_12275 0.59 +0.0
2,604,383 - IAI46_12275 0.87 +0.9
2,604,383 - IAI46_12275 0.87 -1.4
2,604,383 - IAI46_12275 0.87 -0.4
2,604,384 + IAI46_12275 0.87 +0.4
2,604,384 + IAI46_12275 0.87 -0.3
2,604,486 - +0.4
2,604,586 + IAI46_12280 0.16 +1.6
2,604,831 + IAI46_12280 0.50 +0.1
2,604,832 - IAI46_12280 0.50 +0.1
2,605,075 - IAI46_12280 0.84 -0.4
2,605,113 + IAI46_12280 0.89 +0.4
2,605,179 - +0.8
2,605,180 + +1.1
2,605,180 + +0.7
2,605,181 - -0.9
2,605,181 - +0.8
2,605,181 - -1.2
2,605,376 + IAI46_12285 0.39 -0.9
2,605,380 - IAI46_12285 0.39 +0.3

Or see this region's nucleotide sequence