Strain Fitness in Serratia liquefaciens MT49 around IAI46_12105

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12100 and IAI46_12105 are separated by 225 nucleotidesIAI46_12105 and IAI46_12110 are separated by 122 nucleotides IAI46_12100: IAI46_12100 - MmgE/PrpD family protein, at 2,560,071 to 2,561,390 _12100 IAI46_12105: IAI46_12105 - LysR family transcriptional regulator, at 2,561,616 to 2,562,503 _12105 IAI46_12110: IAI46_12110 - beta-lactamase family protein, at 2,562,626 to 2,563,798 _12110 Position (kb) 2561 2562 2563Strain fitness (log2 ratio) -2 -1 0 1at 2560.665 kb on - strand, within IAI46_12100at 2560.927 kb on + strand, within IAI46_12100at 2560.991 kb on + strand, within IAI46_12100at 2561.038 kb on - strand, within IAI46_12100at 2561.051 kb on - strand, within IAI46_12100at 2561.177 kb on + strand, within IAI46_12100at 2561.178 kb on - strand, within IAI46_12100at 2561.189 kb on - strand, within IAI46_12100at 2561.298 kb on + strandat 2561.299 kb on - strandat 2561.822 kb on - strand, within IAI46_12105at 2561.882 kb on + strand, within IAI46_12105at 2561.935 kb on + strand, within IAI46_12105at 2562.052 kb on - strand, within IAI46_12105at 2562.581 kb on - strandat 2562.625 kb on - strandat 2562.631 kb on + strandat 2562.656 kb on - strandat 2562.740 kb on + strandat 2562.955 kb on - strand, within IAI46_12110at 2562.955 kb on - strand, within IAI46_12110at 2562.955 kb on - strand, within IAI46_12110at 2563.019 kb on + strand, within IAI46_12110at 2563.423 kb on - strand, within IAI46_12110

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,560,665 - IAI46_12100 0.45 -0.9
2,560,927 + IAI46_12100 0.65 +0.3
2,560,991 + IAI46_12100 0.70 +0.2
2,561,038 - IAI46_12100 0.73 +0.4
2,561,051 - IAI46_12100 0.74 +0.6
2,561,177 + IAI46_12100 0.84 +0.4
2,561,178 - IAI46_12100 0.84 -0.1
2,561,189 - IAI46_12100 0.85 -0.1
2,561,298 + -1.4
2,561,299 - +0.7
2,561,822 - IAI46_12105 0.23 -0.3
2,561,882 + IAI46_12105 0.30 -0.7
2,561,935 + IAI46_12105 0.36 -0.6
2,562,052 - IAI46_12105 0.49 -0.3
2,562,581 - +0.9
2,562,625 - -0.4
2,562,631 + -1.1
2,562,656 - +0.1
2,562,740 + -0.4
2,562,955 - IAI46_12110 0.28 +0.7
2,562,955 - IAI46_12110 0.28 -0.4
2,562,955 - IAI46_12110 0.28 -1.9
2,563,019 + IAI46_12110 0.34 -0.9
2,563,423 - IAI46_12110 0.68 -2.0

Or see this region's nucleotide sequence