Strain Fitness in Serratia liquefaciens MT49 around IAI46_11860

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11855 and IAI46_11860 are separated by 766 nucleotidesIAI46_11860 and IAI46_11865 are separated by 2 nucleotides IAI46_11855: IAI46_11855 - sulfite exporter TauE/SafE family protein, at 2,506,735 to 2,507,481 _11855 IAI46_11860: IAI46_11860 - HlyD family efflux transporter periplasmic adaptor subunit, at 2,508,248 to 2,509,516 _11860 IAI46_11865: IAI46_11865 - peptidase domain-containing ABC transporter, at 2,509,519 to 2,511,654 _11865 Position (kb) 2508 2509 2510Strain fitness (log2 ratio) -1 0 1at 2507.692 kb on + strandat 2507.895 kb on + strandat 2507.899 kb on + strandat 2508.154 kb on + strandat 2508.158 kb on + strandat 2508.240 kb on + strandat 2508.240 kb on + strandat 2508.321 kb on + strandat 2508.321 kb on + strandat 2508.414 kb on - strand, within IAI46_11860at 2508.471 kb on + strand, within IAI46_11860at 2508.567 kb on - strand, within IAI46_11860at 2508.583 kb on + strand, within IAI46_11860at 2508.626 kb on + strand, within IAI46_11860at 2508.627 kb on - strand, within IAI46_11860at 2508.771 kb on + strand, within IAI46_11860at 2509.512 kb on + strandat 2509.514 kb on + strandat 2509.515 kb on - strandat 2509.515 kb on - strandat 2509.654 kb on - strandat 2509.881 kb on + strand, within IAI46_11865at 2510.084 kb on + strand, within IAI46_11865at 2510.136 kb on - strand, within IAI46_11865at 2510.239 kb on - strand, within IAI46_11865at 2510.410 kb on - strand, within IAI46_11865at 2510.444 kb on + strand, within IAI46_11865at 2510.506 kb on - strand, within IAI46_11865

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,507,692 + -0.3
2,507,895 + -0.5
2,507,899 + -0.9
2,508,154 + +0.4
2,508,158 + +0.1
2,508,240 + +0.8
2,508,240 + -0.5
2,508,321 + -0.5
2,508,321 + -0.9
2,508,414 - IAI46_11860 0.13 -0.4
2,508,471 + IAI46_11860 0.18 +1.5
2,508,567 - IAI46_11860 0.25 -0.7
2,508,583 + IAI46_11860 0.26 +0.5
2,508,626 + IAI46_11860 0.30 -0.1
2,508,627 - IAI46_11860 0.30 +1.1
2,508,771 + IAI46_11860 0.41 -0.8
2,509,512 + +0.1
2,509,514 + +0.9
2,509,515 - -1.3
2,509,515 - +0.5
2,509,654 - -0.5
2,509,881 + IAI46_11865 0.17 +1.1
2,510,084 + IAI46_11865 0.26 +0.8
2,510,136 - IAI46_11865 0.29 +0.3
2,510,239 - IAI46_11865 0.34 +1.1
2,510,410 - IAI46_11865 0.42 +0.8
2,510,444 + IAI46_11865 0.43 -0.2
2,510,506 - IAI46_11865 0.46 +0.1

Or see this region's nucleotide sequence