Strain Fitness in Serratia liquefaciens MT49 around IAI46_11540

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11535 and IAI46_11540 are separated by 37 nucleotidesIAI46_11540 and IAI46_11545 are separated by 177 nucleotidesIAI46_11545 and IAI46_11550 overlap by 4 nucleotides IAI46_11535: IAI46_11535 - bile acid:sodium symporter, at 2,435,921 to 2,436,925 _11535 IAI46_11540: IAI46_11540 - adenosine deaminase, at 2,436,963 to 2,437,961 _11540 IAI46_11545: IAI46_11545 - AAA family ATPase, at 2,438,139 to 2,438,732 _11545 IAI46_11550: IAI46_11550 - PTS sugar transporter subunit IIA, at 2,438,729 to 2,439,166 _11550 Position (kb) 2436 2437 2438Strain fitness (log2 ratio) -2 -1 0 1at 2436.221 kb on + strand, within IAI46_11535at 2436.400 kb on + strand, within IAI46_11535at 2436.421 kb on - strand, within IAI46_11535at 2436.554 kb on + strand, within IAI46_11535at 2436.555 kb on - strand, within IAI46_11535at 2436.556 kb on + strand, within IAI46_11535at 2436.674 kb on + strand, within IAI46_11535at 2436.700 kb on + strand, within IAI46_11535at 2436.701 kb on - strand, within IAI46_11535at 2437.117 kb on - strand, within IAI46_11540at 2437.117 kb on - strand, within IAI46_11540at 2437.117 kb on - strand, within IAI46_11540at 2437.472 kb on + strand, within IAI46_11540at 2437.535 kb on + strand, within IAI46_11540at 2437.654 kb on + strand, within IAI46_11540at 2437.654 kb on + strand, within IAI46_11540at 2437.655 kb on - strand, within IAI46_11540at 2437.655 kb on - strand, within IAI46_11540at 2437.681 kb on + strand, within IAI46_11540at 2437.869 kb on - strandat 2437.990 kb on - strandat 2438.088 kb on - strandat 2438.311 kb on + strand, within IAI46_11545at 2438.311 kb on + strand, within IAI46_11545at 2438.312 kb on - strand, within IAI46_11545at 2438.442 kb on + strand, within IAI46_11545at 2438.442 kb on + strand, within IAI46_11545at 2438.572 kb on - strand, within IAI46_11545at 2438.607 kb on - strand, within IAI46_11545at 2438.623 kb on + strand, within IAI46_11545at 2438.623 kb on + strand, within IAI46_11545at 2438.623 kb on + strand, within IAI46_11545

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,436,221 + IAI46_11535 0.30 +1.3
2,436,400 + IAI46_11535 0.48 +0.5
2,436,421 - IAI46_11535 0.50 -1.1
2,436,554 + IAI46_11535 0.63 +0.7
2,436,555 - IAI46_11535 0.63 -0.5
2,436,556 + IAI46_11535 0.63 -1.2
2,436,674 + IAI46_11535 0.75 +0.4
2,436,700 + IAI46_11535 0.78 +0.5
2,436,701 - IAI46_11535 0.78 +0.9
2,437,117 - IAI46_11540 0.15 +0.4
2,437,117 - IAI46_11540 0.15 +0.2
2,437,117 - IAI46_11540 0.15 +0.6
2,437,472 + IAI46_11540 0.51 +0.2
2,437,535 + IAI46_11540 0.57 -0.1
2,437,654 + IAI46_11540 0.69 +0.1
2,437,654 + IAI46_11540 0.69 -0.4
2,437,655 - IAI46_11540 0.69 -0.2
2,437,655 - IAI46_11540 0.69 +1.0
2,437,681 + IAI46_11540 0.72 -0.1
2,437,869 - +1.0
2,437,990 - -0.8
2,438,088 - +0.7
2,438,311 + IAI46_11545 0.29 -1.8
2,438,311 + IAI46_11545 0.29 +0.7
2,438,312 - IAI46_11545 0.29 -0.3
2,438,442 + IAI46_11545 0.51 -0.3
2,438,442 + IAI46_11545 0.51 -0.8
2,438,572 - IAI46_11545 0.73 +0.8
2,438,607 - IAI46_11545 0.79 -1.5
2,438,623 + IAI46_11545 0.81 -1.5
2,438,623 + IAI46_11545 0.81 -0.1
2,438,623 + IAI46_11545 0.81 +0.2

Or see this region's nucleotide sequence