Strain Fitness in Serratia liquefaciens MT49 around IAI46_11320

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11315 and IAI46_11320 are separated by 240 nucleotidesIAI46_11320 and IAI46_11325 are separated by 6 nucleotides IAI46_11315: IAI46_11315 - polyurethanase, at 2,386,619 to 2,388,466 _11315 IAI46_11320: IAI46_11320 - superoxide dismutase family protein, at 2,388,707 to 2,389,231 _11320 IAI46_11325: IAI46_11325 - FUSC family protein, at 2,389,238 to 2,391,271 _11325 Position (kb) 2388 2389 2390Strain fitness (log2 ratio) -2 -1 0 1 2at 2387.720 kb on - strand, within IAI46_11315at 2387.749 kb on + strand, within IAI46_11315at 2387.770 kb on - strand, within IAI46_11315at 2387.864 kb on - strand, within IAI46_11315at 2387.864 kb on - strand, within IAI46_11315at 2387.947 kb on + strand, within IAI46_11315at 2387.948 kb on - strand, within IAI46_11315at 2387.955 kb on + strand, within IAI46_11315at 2388.119 kb on - strand, within IAI46_11315at 2388.139 kb on - strand, within IAI46_11315at 2388.176 kb on + strand, within IAI46_11315at 2388.190 kb on + strand, within IAI46_11315at 2388.387 kb on + strandat 2388.392 kb on - strandat 2388.416 kb on + strandat 2388.450 kb on + strandat 2388.450 kb on + strandat 2388.507 kb on - strandat 2388.513 kb on - strandat 2388.513 kb on - strandat 2388.513 kb on - strandat 2388.516 kb on + strandat 2388.517 kb on - strandat 2388.517 kb on - strandat 2388.517 kb on - strandat 2388.517 kb on - strandat 2388.517 kb on - strandat 2388.592 kb on + strandat 2388.599 kb on - strandat 2388.599 kb on - strandat 2388.669 kb on - strandat 2388.670 kb on + strandat 2389.019 kb on + strand, within IAI46_11320at 2389.055 kb on + strand, within IAI46_11320at 2389.055 kb on + strand, within IAI46_11320at 2389.056 kb on - strand, within IAI46_11320at 2389.056 kb on - strand, within IAI46_11320at 2389.268 kb on - strandat 2389.463 kb on - strand, within IAI46_11325at 2389.620 kb on + strand, within IAI46_11325at 2389.620 kb on + strand, within IAI46_11325at 2389.621 kb on - strand, within IAI46_11325at 2389.742 kb on + strand, within IAI46_11325at 2389.812 kb on + strand, within IAI46_11325at 2389.818 kb on + strand, within IAI46_11325at 2390.073 kb on + strand, within IAI46_11325at 2390.073 kb on + strand, within IAI46_11325at 2390.186 kb on - strand, within IAI46_11325at 2390.188 kb on - strand, within IAI46_11325at 2390.199 kb on + strand, within IAI46_11325

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,387,720 - IAI46_11315 0.60 -1.1
2,387,749 + IAI46_11315 0.61 -0.5
2,387,770 - IAI46_11315 0.62 +0.2
2,387,864 - IAI46_11315 0.67 +0.5
2,387,864 - IAI46_11315 0.67 +0.9
2,387,947 + IAI46_11315 0.72 -0.1
2,387,948 - IAI46_11315 0.72 +0.5
2,387,955 + IAI46_11315 0.72 -0.7
2,388,119 - IAI46_11315 0.81 +2.1
2,388,139 - IAI46_11315 0.82 +1.1
2,388,176 + IAI46_11315 0.84 -0.2
2,388,190 + IAI46_11315 0.85 -0.8
2,388,387 + +0.0
2,388,392 - -0.1
2,388,416 + -2.2
2,388,450 + +0.4
2,388,450 + +0.3
2,388,507 - +0.7
2,388,513 - +0.7
2,388,513 - -0.8
2,388,513 - +0.3
2,388,516 + -0.4
2,388,517 - -0.4
2,388,517 - +0.5
2,388,517 - +0.7
2,388,517 - +0.3
2,388,517 - -0.5
2,388,592 + -1.1
2,388,599 - +0.5
2,388,599 - -0.7
2,388,669 - -0.4
2,388,670 + +1.2
2,389,019 + IAI46_11320 0.59 -1.1
2,389,055 + IAI46_11320 0.66 +0.9
2,389,055 + IAI46_11320 0.66 +0.9
2,389,056 - IAI46_11320 0.66 +0.8
2,389,056 - IAI46_11320 0.66 +1.8
2,389,268 - -0.8
2,389,463 - IAI46_11325 0.11 +0.2
2,389,620 + IAI46_11325 0.19 +0.3
2,389,620 + IAI46_11325 0.19 +0.5
2,389,621 - IAI46_11325 0.19 +0.1
2,389,742 + IAI46_11325 0.25 -0.4
2,389,812 + IAI46_11325 0.28 +0.5
2,389,818 + IAI46_11325 0.29 +0.3
2,390,073 + IAI46_11325 0.41 +0.2
2,390,073 + IAI46_11325 0.41 -0.2
2,390,186 - IAI46_11325 0.47 -1.1
2,390,188 - IAI46_11325 0.47 -0.1
2,390,199 + IAI46_11325 0.47 +0.2

Or see this region's nucleotide sequence