Strain Fitness in Serratia liquefaciens MT49 around IAI46_11235

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11230 and IAI46_11235 are separated by 123 nucleotidesIAI46_11235 and IAI46_11240 are separated by 41 nucleotides IAI46_11230: IAI46_11230 - Bcr/CflA family multidrug efflux MFS transporter, at 2,371,578 to 2,372,789 _11230 IAI46_11235: IAI46_11235 - LysR family transcriptional regulator, at 2,372,913 to 2,373,821 _11235 IAI46_11240: IAI46_11240 - HTH-type transcriptional repressor PurR, at 2,373,863 to 2,374,888 _11240 Position (kb) 2372 2373 2374Strain fitness (log2 ratio) -2 -1 0 1 2at 2371.926 kb on + strand, within IAI46_11230at 2371.926 kb on + strand, within IAI46_11230at 2371.938 kb on - strand, within IAI46_11230at 2372.014 kb on + strand, within IAI46_11230at 2372.015 kb on - strand, within IAI46_11230at 2372.025 kb on + strand, within IAI46_11230at 2372.026 kb on - strand, within IAI46_11230at 2372.026 kb on - strand, within IAI46_11230at 2372.026 kb on - strand, within IAI46_11230at 2372.026 kb on - strand, within IAI46_11230at 2372.051 kb on - strand, within IAI46_11230at 2372.051 kb on - strand, within IAI46_11230at 2372.077 kb on + strand, within IAI46_11230at 2372.154 kb on - strand, within IAI46_11230at 2372.154 kb on - strand, within IAI46_11230at 2372.384 kb on + strand, within IAI46_11230at 2372.385 kb on - strand, within IAI46_11230at 2372.716 kb on + strandat 2372.720 kb on + strandat 2372.721 kb on - strandat 2372.761 kb on + strandat 2372.761 kb on + strandat 2372.762 kb on - strandat 2372.769 kb on - strandat 2372.811 kb on - strandat 2372.913 kb on - strandat 2372.925 kb on + strandat 2372.925 kb on + strandat 2373.512 kb on + strand, within IAI46_11235at 2373.512 kb on + strand, within IAI46_11235at 2373.513 kb on - strand, within IAI46_11235at 2373.627 kb on - strand, within IAI46_11235at 2373.646 kb on + strand, within IAI46_11235at 2373.647 kb on - strand, within IAI46_11235at 2373.861 kb on - strandat 2373.861 kb on - strandat 2374.040 kb on - strand, within IAI46_11240at 2374.083 kb on - strand, within IAI46_11240at 2374.083 kb on - strand, within IAI46_11240at 2374.426 kb on + strand, within IAI46_11240at 2374.530 kb on - strand, within IAI46_11240at 2374.569 kb on + strand, within IAI46_11240at 2374.619 kb on - strand, within IAI46_11240at 2374.619 kb on - strand, within IAI46_11240

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,371,926 + IAI46_11230 0.29 -1.8
2,371,926 + IAI46_11230 0.29 -0.1
2,371,938 - IAI46_11230 0.30 -0.7
2,372,014 + IAI46_11230 0.36 +0.5
2,372,015 - IAI46_11230 0.36 -0.7
2,372,025 + IAI46_11230 0.37 -0.6
2,372,026 - IAI46_11230 0.37 -0.5
2,372,026 - IAI46_11230 0.37 -0.2
2,372,026 - IAI46_11230 0.37 +0.2
2,372,026 - IAI46_11230 0.37 +0.5
2,372,051 - IAI46_11230 0.39 +0.4
2,372,051 - IAI46_11230 0.39 +0.5
2,372,077 + IAI46_11230 0.41 -1.4
2,372,154 - IAI46_11230 0.48 +0.7
2,372,154 - IAI46_11230 0.48 +2.0
2,372,384 + IAI46_11230 0.67 +1.1
2,372,385 - IAI46_11230 0.67 +0.4
2,372,716 + +0.3
2,372,720 + -1.4
2,372,721 - +0.1
2,372,761 + +0.9
2,372,761 + +0.3
2,372,762 - -0.1
2,372,769 - +0.6
2,372,811 - +0.1
2,372,913 - +0.5
2,372,925 + +0.5
2,372,925 + -0.4
2,373,512 + IAI46_11235 0.66 -0.5
2,373,512 + IAI46_11235 0.66 -0.1
2,373,513 - IAI46_11235 0.66 +1.7
2,373,627 - IAI46_11235 0.79 +1.5
2,373,646 + IAI46_11235 0.81 +1.1
2,373,647 - IAI46_11235 0.81 +0.3
2,373,861 - -0.5
2,373,861 - +0.6
2,374,040 - IAI46_11240 0.17 +0.9
2,374,083 - IAI46_11240 0.21 -0.1
2,374,083 - IAI46_11240 0.21 +0.5
2,374,426 + IAI46_11240 0.55 -1.3
2,374,530 - IAI46_11240 0.65 -1.1
2,374,569 + IAI46_11240 0.69 -0.2
2,374,619 - IAI46_11240 0.74 -0.5
2,374,619 - IAI46_11240 0.74 -0.5

Or see this region's nucleotide sequence