Strain Fitness in Serratia liquefaciens MT49 around IAI46_09835

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09830 and IAI46_09835 are separated by 199 nucleotidesIAI46_09835 and IAI46_09840 are separated by 147 nucleotidesIAI46_09840 and IAI46_09845 are separated by 229 nucleotides IAI46_09830: IAI46_09830 - PTS glucose transporter subunit IIBC, at 2,080,933 to 2,082,366 _09830 IAI46_09835: IAI46_09835 - hypothetical protein, at 2,082,566 to 2,083,075 _09835 IAI46_09840: IAI46_09840 - manganese-binding transcriptional regulator MntR, at 2,083,223 to 2,083,693 _09840 IAI46_09845: IAI46_09845 - Nramp family divalent metal transporter, at 2,083,923 to 2,085,227 _09845 Position (kb) 2082 2083 2084Strain fitness (log2 ratio) -1 0 1 2at 2081.580 kb on - strand, within IAI46_09830at 2081.651 kb on - strand, within IAI46_09830at 2081.652 kb on + strand, within IAI46_09830at 2081.677 kb on - strand, within IAI46_09830at 2081.911 kb on - strand, within IAI46_09830at 2081.965 kb on - strand, within IAI46_09830at 2082.022 kb on + strand, within IAI46_09830at 2082.022 kb on + strand, within IAI46_09830at 2082.034 kb on + strand, within IAI46_09830at 2082.038 kb on - strand, within IAI46_09830at 2082.038 kb on - strand, within IAI46_09830at 2082.350 kb on - strandat 2082.365 kb on - strandat 2082.465 kb on + strandat 2082.626 kb on + strand, within IAI46_09835at 2082.627 kb on - strand, within IAI46_09835at 2082.646 kb on + strand, within IAI46_09835at 2082.647 kb on - strand, within IAI46_09835at 2082.647 kb on - strand, within IAI46_09835at 2082.657 kb on - strand, within IAI46_09835at 2082.664 kb on + strand, within IAI46_09835at 2082.692 kb on + strand, within IAI46_09835at 2082.714 kb on + strand, within IAI46_09835at 2082.714 kb on + strand, within IAI46_09835at 2082.714 kb on + strand, within IAI46_09835at 2082.770 kb on - strand, within IAI46_09835at 2082.782 kb on + strand, within IAI46_09835at 2082.840 kb on + strand, within IAI46_09835at 2082.840 kb on + strand, within IAI46_09835at 2082.854 kb on + strand, within IAI46_09835at 2082.855 kb on - strand, within IAI46_09835at 2082.899 kb on + strand, within IAI46_09835at 2082.966 kb on + strand, within IAI46_09835at 2082.966 kb on + strand, within IAI46_09835at 2082.973 kb on - strand, within IAI46_09835at 2082.973 kb on - strand, within IAI46_09835at 2082.973 kb on - strand, within IAI46_09835at 2082.973 kb on - strand, within IAI46_09835at 2083.056 kb on - strandat 2083.056 kb on - strandat 2083.056 kb on - strandat 2083.056 kb on - strandat 2083.104 kb on - strandat 2083.118 kb on - strandat 2083.153 kb on + strandat 2083.191 kb on - strandat 2083.693 kb on + strandat 2083.716 kb on + strandat 2083.737 kb on + strandat 2083.753 kb on + strandat 2083.754 kb on - strandat 2083.754 kb on - strandat 2083.777 kb on + strandat 2083.815 kb on - strandat 2083.836 kb on - strandat 2083.967 kb on + strandat 2083.975 kb on + strandat 2083.980 kb on - strandat 2084.058 kb on + strand, within IAI46_09845at 2084.058 kb on + strand, within IAI46_09845at 2084.058 kb on + strand, within IAI46_09845at 2084.059 kb on - strand, within IAI46_09845at 2084.059 kb on - strand, within IAI46_09845at 2084.059 kb on - strand, within IAI46_09845at 2084.059 kb on - strand, within IAI46_09845at 2084.060 kb on + strand, within IAI46_09845at 2084.060 kb on + strand, within IAI46_09845at 2084.061 kb on - strand, within IAI46_09845

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,081,580 - IAI46_09830 0.45 +0.5
2,081,651 - IAI46_09830 0.50 +0.2
2,081,652 + IAI46_09830 0.50 -0.6
2,081,677 - IAI46_09830 0.52 -0.6
2,081,911 - IAI46_09830 0.68 -0.4
2,081,965 - IAI46_09830 0.72 -0.2
2,082,022 + IAI46_09830 0.76 -0.7
2,082,022 + IAI46_09830 0.76 +2.2
2,082,034 + IAI46_09830 0.77 +1.3
2,082,038 - IAI46_09830 0.77 -0.2
2,082,038 - IAI46_09830 0.77 -0.3
2,082,350 - -0.5
2,082,365 - -0.2
2,082,465 + +0.5
2,082,626 + IAI46_09835 0.12 -0.2
2,082,627 - IAI46_09835 0.12 +0.9
2,082,646 + IAI46_09835 0.16 +0.1
2,082,647 - IAI46_09835 0.16 -0.9
2,082,647 - IAI46_09835 0.16 -1.2
2,082,657 - IAI46_09835 0.18 +0.8
2,082,664 + IAI46_09835 0.19 -0.5
2,082,692 + IAI46_09835 0.25 -0.5
2,082,714 + IAI46_09835 0.29 +0.1
2,082,714 + IAI46_09835 0.29 +0.8
2,082,714 + IAI46_09835 0.29 +1.6
2,082,770 - IAI46_09835 0.40 +0.8
2,082,782 + IAI46_09835 0.42 -1.7
2,082,840 + IAI46_09835 0.54 +0.4
2,082,840 + IAI46_09835 0.54 +0.5
2,082,854 + IAI46_09835 0.56 -0.7
2,082,855 - IAI46_09835 0.57 +0.5
2,082,899 + IAI46_09835 0.65 -0.8
2,082,966 + IAI46_09835 0.78 +0.3
2,082,966 + IAI46_09835 0.78 +1.1
2,082,973 - IAI46_09835 0.80 -0.7
2,082,973 - IAI46_09835 0.80 +0.8
2,082,973 - IAI46_09835 0.80 +0.2
2,082,973 - IAI46_09835 0.80 +0.7
2,083,056 - -0.1
2,083,056 - +0.2
2,083,056 - -1.4
2,083,056 - +0.3
2,083,104 - +0.3
2,083,118 - -0.1
2,083,153 + +0.4
2,083,191 - -1.4
2,083,693 + +0.1
2,083,716 + -1.6
2,083,737 + +0.0
2,083,753 + -0.5
2,083,754 - +0.7
2,083,754 - +0.4
2,083,777 + -1.7
2,083,815 - +0.2
2,083,836 - +0.1
2,083,967 + -0.2
2,083,975 + -0.7
2,083,980 - -1.4
2,084,058 + IAI46_09845 0.10 +0.4
2,084,058 + IAI46_09845 0.10 -0.7
2,084,058 + IAI46_09845 0.10 +0.5
2,084,059 - IAI46_09845 0.10 -0.0
2,084,059 - IAI46_09845 0.10 -0.8
2,084,059 - IAI46_09845 0.10 -0.3
2,084,059 - IAI46_09845 0.10 -0.3
2,084,060 + IAI46_09845 0.10 -1.3
2,084,060 + IAI46_09845 0.10 -0.5
2,084,061 - IAI46_09845 0.11 -0.5

Or see this region's nucleotide sequence