Strain Fitness in Serratia liquefaciens MT49 around IAI46_09660

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09645 and IAI46_09650 are separated by 4 nucleotidesIAI46_09650 and IAI46_09655 overlap by 1 nucleotidesIAI46_09655 and IAI46_09660 are separated by 49 nucleotidesIAI46_09660 and IAI46_09665 are separated by 473 nucleotides IAI46_09645: IAI46_09645 - YeeE/YedE family protein, at 2,046,506 to 2,046,940 _09645 IAI46_09650: IAI46_09650 - YeeE/YedE family protein, at 2,046,945 to 2,047,364 _09650 IAI46_09655: IAI46_09655 - VOC family protein, at 2,047,364 to 2,047,762 _09655 IAI46_09660: IAI46_09660 - peptide MFS transporter, at 2,047,812 to 2,049,365 _09660 IAI46_09665: IAI46_09665 - multidrug efflux MFS transporter MdtG, at 2,049,839 to 2,051,077 _09665 Position (kb) 2047 2048 2049 2050Strain fitness (log2 ratio) -2 -1 0 1 2at 2046.886 kb on + strand, within IAI46_09645at 2046.887 kb on - strand, within IAI46_09645at 2046.901 kb on + strandat 2046.939 kb on - strandat 2046.949 kb on - strandat 2046.968 kb on - strandat 2047.162 kb on + strand, within IAI46_09650at 2047.163 kb on - strand, within IAI46_09650at 2047.336 kb on - strandat 2047.336 kb on - strandat 2047.343 kb on + strandat 2047.343 kb on + strandat 2047.362 kb on + strandat 2047.363 kb on - strandat 2047.371 kb on + strandat 2047.599 kb on - strand, within IAI46_09655at 2047.674 kb on - strand, within IAI46_09655at 2047.674 kb on - strand, within IAI46_09655at 2047.810 kb on + strandat 2047.844 kb on + strandat 2047.844 kb on + strandat 2047.971 kb on - strand, within IAI46_09660at 2048.130 kb on - strand, within IAI46_09660at 2048.273 kb on + strand, within IAI46_09660at 2048.274 kb on - strand, within IAI46_09660at 2048.274 kb on - strand, within IAI46_09660at 2048.274 kb on - strand, within IAI46_09660at 2048.300 kb on + strand, within IAI46_09660at 2048.392 kb on + strand, within IAI46_09660at 2048.530 kb on + strand, within IAI46_09660at 2048.535 kb on - strand, within IAI46_09660at 2048.535 kb on - strand, within IAI46_09660at 2048.540 kb on - strand, within IAI46_09660at 2048.735 kb on - strand, within IAI46_09660at 2048.888 kb on + strand, within IAI46_09660at 2048.891 kb on - strand, within IAI46_09660at 2048.933 kb on + strand, within IAI46_09660at 2049.082 kb on + strand, within IAI46_09660at 2049.404 kb on + strandat 2049.404 kb on + strandat 2049.405 kb on - strandat 2049.406 kb on + strandat 2049.406 kb on + strandat 2049.407 kb on - strandat 2049.414 kb on + strandat 2049.414 kb on + strandat 2049.415 kb on - strandat 2049.418 kb on + strandat 2049.418 kb on + strandat 2049.418 kb on + strandat 2049.418 kb on + strandat 2049.418 kb on + strandat 2049.418 kb on + strandat 2049.419 kb on - strandat 2049.419 kb on - strandat 2049.419 kb on - strandat 2049.419 kb on - strandat 2049.419 kb on - strandat 2049.424 kb on + strandat 2049.428 kb on + strandat 2049.644 kb on + strandat 2049.645 kb on - strandat 2049.668 kb on - strandat 2049.776 kb on + strandat 2049.834 kb on + strandat 2049.835 kb on - strandat 2049.840 kb on + strandat 2050.010 kb on + strand, within IAI46_09665at 2050.010 kb on + strand, within IAI46_09665at 2050.011 kb on - strand, within IAI46_09665at 2050.011 kb on - strand, within IAI46_09665at 2050.011 kb on - strand, within IAI46_09665at 2050.011 kb on - strand, within IAI46_09665at 2050.011 kb on - strand, within IAI46_09665at 2050.013 kb on - strand, within IAI46_09665at 2050.032 kb on + strand, within IAI46_09665at 2050.033 kb on - strand, within IAI46_09665at 2050.033 kb on - strand, within IAI46_09665at 2050.033 kb on - strand, within IAI46_09665at 2050.037 kb on - strand, within IAI46_09665at 2050.071 kb on + strand, within IAI46_09665at 2050.199 kb on + strand, within IAI46_09665at 2050.200 kb on - strand, within IAI46_09665at 2050.230 kb on - strand, within IAI46_09665at 2050.350 kb on + strand, within IAI46_09665at 2050.351 kb on - strand, within IAI46_09665at 2050.351 kb on - strand, within IAI46_09665

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,046,886 + IAI46_09645 0.87 +0.8
2,046,887 - IAI46_09645 0.88 +1.6
2,046,901 + -0.1
2,046,939 - -1.4
2,046,949 - +0.8
2,046,968 - -0.7
2,047,162 + IAI46_09650 0.52 -2.3
2,047,163 - IAI46_09650 0.52 +0.6
2,047,336 - +0.7
2,047,336 - -0.5
2,047,343 + -1.6
2,047,343 + -0.4
2,047,362 + +0.4
2,047,363 - -0.6
2,047,371 + +0.6
2,047,599 - IAI46_09655 0.59 -2.3
2,047,674 - IAI46_09655 0.78 +0.2
2,047,674 - IAI46_09655 0.78 -0.2
2,047,810 + -0.7
2,047,844 + +0.0
2,047,844 + -1.0
2,047,971 - IAI46_09660 0.10 -0.3
2,048,130 - IAI46_09660 0.20 +0.4
2,048,273 + IAI46_09660 0.30 +0.9
2,048,274 - IAI46_09660 0.30 -1.4
2,048,274 - IAI46_09660 0.30 -1.1
2,048,274 - IAI46_09660 0.30 +0.4
2,048,300 + IAI46_09660 0.31 -1.2
2,048,392 + IAI46_09660 0.37 +0.3
2,048,530 + IAI46_09660 0.46 +0.8
2,048,535 - IAI46_09660 0.47 +0.4
2,048,535 - IAI46_09660 0.47 -0.4
2,048,540 - IAI46_09660 0.47 -0.2
2,048,735 - IAI46_09660 0.59 +1.9
2,048,888 + IAI46_09660 0.69 +1.2
2,048,891 - IAI46_09660 0.69 -0.2
2,048,933 + IAI46_09660 0.72 -1.0
2,049,082 + IAI46_09660 0.82 +1.4
2,049,404 + -0.4
2,049,404 + -0.5
2,049,405 - -1.9
2,049,406 + -1.0
2,049,406 + +1.6
2,049,407 - +0.0
2,049,414 + +0.2
2,049,414 + +0.1
2,049,415 - -0.5
2,049,418 + -1.2
2,049,418 + +0.7
2,049,418 + +1.4
2,049,418 + +1.1
2,049,418 + +0.1
2,049,418 + -0.4
2,049,419 - -0.2
2,049,419 - +0.6
2,049,419 - +0.4
2,049,419 - +0.6
2,049,419 - -1.9
2,049,424 + +0.0
2,049,428 + -0.2
2,049,644 + -0.6
2,049,645 - +0.8
2,049,668 - +1.2
2,049,776 + +0.4
2,049,834 + +0.3
2,049,835 - -1.0
2,049,840 + -0.2
2,050,010 + IAI46_09665 0.14 -0.0
2,050,010 + IAI46_09665 0.14 +1.0
2,050,011 - IAI46_09665 0.14 +0.1
2,050,011 - IAI46_09665 0.14 +0.5
2,050,011 - IAI46_09665 0.14 -0.0
2,050,011 - IAI46_09665 0.14 -1.7
2,050,011 - IAI46_09665 0.14 +0.3
2,050,013 - IAI46_09665 0.14 +0.2
2,050,032 + IAI46_09665 0.16 +1.2
2,050,033 - IAI46_09665 0.16 +0.5
2,050,033 - IAI46_09665 0.16 +0.2
2,050,033 - IAI46_09665 0.16 -0.3
2,050,037 - IAI46_09665 0.16 +0.6
2,050,071 + IAI46_09665 0.19 +1.1
2,050,199 + IAI46_09665 0.29 +0.2
2,050,200 - IAI46_09665 0.29 +0.8
2,050,230 - IAI46_09665 0.32 -0.5
2,050,350 + IAI46_09665 0.41 -0.4
2,050,351 - IAI46_09665 0.41 -0.1
2,050,351 - IAI46_09665 0.41 -0.1

Or see this region's nucleotide sequence