Strain Fitness in Serratia liquefaciens MT49 around IAI46_07080

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07070 and IAI46_07075 are separated by 51 nucleotidesIAI46_07075 and IAI46_07080 are separated by 20 nucleotidesIAI46_07080 and IAI46_07085 overlap by 8 nucleotides IAI46_07070: IAI46_07070 - TetR/AcrR family transcriptional regulator, at 1,493,800 to 1,494,444 _07070 IAI46_07075: IAI46_07075 - methionine ABC transporter substrate-binding protein, at 1,494,496 to 1,495,314 _07075 IAI46_07080: IAI46_07080 - ABC transporter permease, at 1,495,335 to 1,496,003 _07080 IAI46_07085: IAI46_07085 - methionine ABC transporter ATP-binding protein, at 1,495,996 to 1,497,021 _07085 Position (kb) 1495 1496 1497Strain fitness (log2 ratio) -2 -1 0 1at 1494.436 kb on - strandat 1494.442 kb on + strandat 1494.443 kb on - strandat 1494.443 kb on - strandat 1494.465 kb on - strandat 1494.635 kb on + strand, within IAI46_07075at 1494.746 kb on + strand, within IAI46_07075at 1494.859 kb on - strand, within IAI46_07075at 1494.979 kb on - strand, within IAI46_07075at 1495.022 kb on + strand, within IAI46_07075at 1495.022 kb on + strand, within IAI46_07075at 1495.022 kb on + strand, within IAI46_07075at 1495.047 kb on + strand, within IAI46_07075at 1495.065 kb on - strand, within IAI46_07075at 1495.131 kb on - strand, within IAI46_07075at 1495.160 kb on - strand, within IAI46_07075at 1495.218 kb on + strand, within IAI46_07075at 1495.219 kb on - strand, within IAI46_07075at 1495.219 kb on - strand, within IAI46_07075at 1495.219 kb on - strand, within IAI46_07075at 1495.299 kb on + strandat 1495.300 kb on - strandat 1495.300 kb on - strandat 1495.300 kb on - strandat 1495.321 kb on + strandat 1495.333 kb on - strandat 1495.337 kb on - strandat 1495.358 kb on + strandat 1495.359 kb on - strandat 1495.359 kb on - strandat 1495.398 kb on + strandat 1495.398 kb on + strandat 1495.399 kb on - strandat 1495.399 kb on - strandat 1495.533 kb on - strand, within IAI46_07080at 1495.589 kb on + strand, within IAI46_07080at 1495.679 kb on - strand, within IAI46_07080at 1495.832 kb on - strand, within IAI46_07080at 1495.903 kb on - strand, within IAI46_07080at 1495.934 kb on + strand, within IAI46_07080at 1495.934 kb on + strand, within IAI46_07080at 1495.935 kb on - strand, within IAI46_07080at 1495.935 kb on - strand, within IAI46_07080at 1495.935 kb on - strand, within IAI46_07080at 1495.936 kb on + strand, within IAI46_07080at 1495.936 kb on + strand, within IAI46_07080at 1495.937 kb on - strandat 1495.937 kb on - strandat 1495.937 kb on - strandat 1496.008 kb on - strandat 1496.090 kb on + strandat 1496.091 kb on - strandat 1496.148 kb on + strand, within IAI46_07085at 1496.148 kb on + strand, within IAI46_07085at 1496.148 kb on + strand, within IAI46_07085at 1496.148 kb on + strand, within IAI46_07085at 1496.149 kb on - strand, within IAI46_07085at 1496.149 kb on - strand, within IAI46_07085at 1496.149 kb on - strand, within IAI46_07085at 1496.149 kb on - strand, within IAI46_07085at 1496.152 kb on + strand, within IAI46_07085at 1496.152 kb on + strand, within IAI46_07085at 1496.153 kb on - strand, within IAI46_07085at 1496.160 kb on - strand, within IAI46_07085at 1496.160 kb on - strand, within IAI46_07085at 1496.612 kb on + strand, within IAI46_07085

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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1,494,436 - +1.3
1,494,442 + +0.1
1,494,443 - +0.6
1,494,443 - -1.4
1,494,465 - +0.5
1,494,635 + IAI46_07075 0.17 +1.0
1,494,746 + IAI46_07075 0.31 -0.6
1,494,859 - IAI46_07075 0.44 -0.4
1,494,979 - IAI46_07075 0.59 +0.2
1,495,022 + IAI46_07075 0.64 -0.2
1,495,022 + IAI46_07075 0.64 +1.2
1,495,022 + IAI46_07075 0.64 -0.0
1,495,047 + IAI46_07075 0.67 -0.4
1,495,065 - IAI46_07075 0.69 -0.2
1,495,131 - IAI46_07075 0.78 +0.6
1,495,160 - IAI46_07075 0.81 -0.1
1,495,218 + IAI46_07075 0.88 +0.6
1,495,219 - IAI46_07075 0.88 +0.2
1,495,219 - IAI46_07075 0.88 -0.0
1,495,219 - IAI46_07075 0.88 -0.6
1,495,299 + -1.6
1,495,300 - -0.1
1,495,300 - -0.2
1,495,300 - +0.4
1,495,321 + +0.5
1,495,333 - +0.2
1,495,337 - -0.3
1,495,358 + +0.1
1,495,359 - +1.3
1,495,359 - +0.2
1,495,398 + +0.8
1,495,398 + +1.1
1,495,399 - -0.1
1,495,399 - -0.1
1,495,533 - IAI46_07080 0.30 +0.7
1,495,589 + IAI46_07080 0.38 +0.5
1,495,679 - IAI46_07080 0.51 -0.6
1,495,832 - IAI46_07080 0.74 +0.6
1,495,903 - IAI46_07080 0.85 +1.2
1,495,934 + IAI46_07080 0.90 -0.0
1,495,934 + IAI46_07080 0.90 -0.7
1,495,935 - IAI46_07080 0.90 +1.0
1,495,935 - IAI46_07080 0.90 +1.1
1,495,935 - IAI46_07080 0.90 +0.1
1,495,936 + IAI46_07080 0.90 +0.3
1,495,936 + IAI46_07080 0.90 +0.2
1,495,937 - +0.1
1,495,937 - +0.8
1,495,937 - -0.1
1,496,008 - +0.2
1,496,090 + -0.9
1,496,091 - -0.6
1,496,148 + IAI46_07085 0.15 +0.0
1,496,148 + IAI46_07085 0.15 -0.2
1,496,148 + IAI46_07085 0.15 -0.6
1,496,148 + IAI46_07085 0.15 +1.4
1,496,149 - IAI46_07085 0.15 -0.2
1,496,149 - IAI46_07085 0.15 -1.1
1,496,149 - IAI46_07085 0.15 -1.8
1,496,149 - IAI46_07085 0.15 +0.2
1,496,152 + IAI46_07085 0.15 -0.4
1,496,152 + IAI46_07085 0.15 -0.6
1,496,153 - IAI46_07085 0.15 -0.8
1,496,160 - IAI46_07085 0.16 -0.3
1,496,160 - IAI46_07085 0.16 -1.1
1,496,612 + IAI46_07085 0.60 -0.5

Or see this region's nucleotide sequence