Strain Fitness in Serratia liquefaciens MT49 around IAI46_07060

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07055 and IAI46_07060 are separated by 63 nucleotidesIAI46_07060 and IAI46_07065 are separated by 203 nucleotidesIAI46_07065 and IAI46_07070 are separated by 175 nucleotides IAI46_07055: IAI46_07055 - bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase, at 1,491,919 to 1,492,842 _07055 IAI46_07060: IAI46_07060 - DUF1471 domain-containing protein, at 1,492,906 to 1,493,163 _07060 IAI46_07065: IAI46_07065 - DUF1471 domain-containing protein, at 1,493,367 to 1,493,624 _07065 IAI46_07070: IAI46_07070 - TetR/AcrR family transcriptional regulator, at 1,493,800 to 1,494,444 _07070 Position (kb) 1492 1493 1494Strain fitness (log2 ratio) -1 0 1 2at 1491.990 kb on + strandat 1492.013 kb on + strand, within IAI46_07055at 1492.013 kb on + strand, within IAI46_07055at 1492.023 kb on + strand, within IAI46_07055at 1492.023 kb on + strand, within IAI46_07055at 1492.046 kb on + strand, within IAI46_07055at 1492.046 kb on + strand, within IAI46_07055at 1492.242 kb on + strand, within IAI46_07055at 1492.242 kb on + strand, within IAI46_07055at 1492.243 kb on - strand, within IAI46_07055at 1492.290 kb on + strand, within IAI46_07055at 1492.322 kb on + strand, within IAI46_07055at 1492.323 kb on - strand, within IAI46_07055at 1492.326 kb on + strand, within IAI46_07055at 1492.327 kb on - strand, within IAI46_07055at 1492.416 kb on - strand, within IAI46_07055at 1492.438 kb on - strand, within IAI46_07055at 1492.453 kb on - strand, within IAI46_07055at 1492.514 kb on - strand, within IAI46_07055at 1492.541 kb on + strand, within IAI46_07055at 1492.696 kb on + strand, within IAI46_07055at 1492.702 kb on + strand, within IAI46_07055at 1492.744 kb on + strand, within IAI46_07055at 1492.744 kb on + strand, within IAI46_07055at 1492.744 kb on + strand, within IAI46_07055at 1492.744 kb on + strand, within IAI46_07055at 1492.745 kb on - strand, within IAI46_07055at 1492.748 kb on - strand, within IAI46_07055at 1492.748 kb on - strand, within IAI46_07055at 1492.748 kb on - strand, within IAI46_07055at 1492.809 kb on + strandat 1492.810 kb on - strandat 1492.813 kb on + strandat 1492.814 kb on - strandat 1492.844 kb on + strandat 1492.854 kb on - strandat 1492.908 kb on - strandat 1492.908 kb on - strandat 1492.914 kb on - strandat 1492.926 kb on + strandat 1492.951 kb on - strand, within IAI46_07060at 1492.974 kb on + strand, within IAI46_07060at 1493.183 kb on + strandat 1493.184 kb on - strandat 1493.193 kb on - strandat 1493.225 kb on - strandat 1493.373 kb on - strandat 1493.630 kb on + strandat 1493.661 kb on - strandat 1493.661 kb on - strandat 1493.702 kb on - strandat 1493.708 kb on + strandat 1493.709 kb on - strandat 1493.787 kb on + strandat 1493.788 kb on - strandat 1493.799 kb on + strandat 1493.799 kb on + strandat 1493.908 kb on + strand, within IAI46_07070at 1493.969 kb on - strand, within IAI46_07070at 1494.020 kb on - strand, within IAI46_07070

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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1,491,990 + +0.0
1,492,013 + IAI46_07055 0.10 -0.5
1,492,013 + IAI46_07055 0.10 +0.1
1,492,023 + IAI46_07055 0.11 -0.2
1,492,023 + IAI46_07055 0.11 +0.1
1,492,046 + IAI46_07055 0.14 +0.3
1,492,046 + IAI46_07055 0.14 -1.0
1,492,242 + IAI46_07055 0.35 -0.3
1,492,242 + IAI46_07055 0.35 +0.8
1,492,243 - IAI46_07055 0.35 +1.5
1,492,290 + IAI46_07055 0.40 -0.5
1,492,322 + IAI46_07055 0.44 +0.2
1,492,323 - IAI46_07055 0.44 +1.0
1,492,326 + IAI46_07055 0.44 +0.8
1,492,327 - IAI46_07055 0.44 -0.0
1,492,416 - IAI46_07055 0.54 +1.2
1,492,438 - IAI46_07055 0.56 +1.1
1,492,453 - IAI46_07055 0.58 +1.4
1,492,514 - IAI46_07055 0.64 +1.3
1,492,541 + IAI46_07055 0.67 -0.2
1,492,696 + IAI46_07055 0.84 +1.2
1,492,702 + IAI46_07055 0.85 +0.4
1,492,744 + IAI46_07055 0.89 -0.8
1,492,744 + IAI46_07055 0.89 +0.9
1,492,744 + IAI46_07055 0.89 +1.1
1,492,744 + IAI46_07055 0.89 -0.3
1,492,745 - IAI46_07055 0.89 +0.2
1,492,748 - IAI46_07055 0.90 -0.8
1,492,748 - IAI46_07055 0.90 +0.8
1,492,748 - IAI46_07055 0.90 +0.3
1,492,809 + +0.2
1,492,810 - +0.2
1,492,813 + -0.2
1,492,814 - +0.7
1,492,844 + -0.0
1,492,854 - +0.8
1,492,908 - -0.3
1,492,908 - +0.2
1,492,914 - -0.3
1,492,926 + -0.2
1,492,951 - IAI46_07060 0.17 +0.1
1,492,974 + IAI46_07060 0.26 +1.8
1,493,183 + -0.4
1,493,184 - +0.2
1,493,193 - +1.0
1,493,225 - +0.7
1,493,373 - +0.5
1,493,630 + +0.6
1,493,661 - +0.6
1,493,661 - -1.3
1,493,702 - +0.8
1,493,708 + -1.0
1,493,709 - +1.0
1,493,787 + +0.3
1,493,788 - +0.6
1,493,799 + -0.2
1,493,799 + +0.2
1,493,908 + IAI46_07070 0.17 -0.0
1,493,969 - IAI46_07070 0.26 -0.5
1,494,020 - IAI46_07070 0.34 -0.5

Or see this region's nucleotide sequence