Strain Fitness in Serratia liquefaciens MT49 around IAI46_06550

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06550 and IAI46_06555 are separated by 108 nucleotidesIAI46_06555 and IAI46_06560 are separated by 4 nucleotides IAI46_06550: IAI46_06550 - excinuclease ABC subunit B, at 1,395,927 to 1,397,939 _06550 IAI46_06555: IAI46_06555 - DUF2132 domain-containing protein, at 1,398,048 to 1,398,305 _06555 IAI46_06560: IAI46_06560 - uridine diphosphate-N-acetylglucosamine-binding protein YvcK, at 1,398,310 to 1,399,227 _06560 Position (kb) 1395 1396 1397 1398Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1394.935 kb on + strandat 1394.935 kb on + strandat 1394.935 kb on + strandat 1394.935 kb on + strandat 1394.935 kb on + strandat 1394.935 kb on + strandat 1394.936 kb on - strandat 1394.936 kb on - strandat 1394.936 kb on - strandat 1394.939 kb on + strandat 1394.940 kb on - strandat 1394.956 kb on + strandat 1394.957 kb on - strandat 1394.987 kb on + strandat 1394.987 kb on + strandat 1395.012 kb on + strandat 1395.097 kb on + strandat 1395.098 kb on - strandat 1395.131 kb on + strandat 1395.147 kb on - strandat 1395.203 kb on + strandat 1395.272 kb on + strandat 1395.272 kb on + strandat 1395.273 kb on - strandat 1395.310 kb on - strandat 1395.310 kb on - strandat 1395.348 kb on + strandat 1395.355 kb on - strandat 1395.355 kb on - strandat 1395.376 kb on - strandat 1395.513 kb on - strandat 1395.628 kb on + strandat 1395.668 kb on + strandat 1395.674 kb on + strandat 1395.675 kb on - strandat 1395.680 kb on - strandat 1395.852 kb on + strandat 1395.853 kb on - strandat 1395.853 kb on - strandat 1395.856 kb on + strandat 1395.857 kb on - strandat 1395.857 kb on - strandat 1395.992 kb on + strandat 1396.036 kb on + strandat 1396.036 kb on + strandat 1396.045 kb on + strandat 1396.125 kb on - strandat 1396.146 kb on + strand, within IAI46_06550at 1396.147 kb on - strand, within IAI46_06550at 1396.147 kb on - strand, within IAI46_06550at 1396.203 kb on + strand, within IAI46_06550at 1396.204 kb on - strand, within IAI46_06550at 1396.204 kb on - strand, within IAI46_06550at 1396.204 kb on - strand, within IAI46_06550at 1396.204 kb on - strand, within IAI46_06550at 1396.204 kb on - strand, within IAI46_06550at 1396.209 kb on + strand, within IAI46_06550at 1396.209 kb on + strand, within IAI46_06550at 1396.209 kb on + strand, within IAI46_06550at 1396.209 kb on + strand, within IAI46_06550at 1396.210 kb on - strand, within IAI46_06550at 1396.212 kb on + strand, within IAI46_06550at 1396.213 kb on - strand, within IAI46_06550at 1396.227 kb on + strand, within IAI46_06550at 1396.227 kb on + strand, within IAI46_06550at 1396.227 kb on + strand, within IAI46_06550at 1396.227 kb on + strand, within IAI46_06550at 1396.228 kb on - strand, within IAI46_06550at 1396.386 kb on + strand, within IAI46_06550at 1396.467 kb on + strand, within IAI46_06550at 1396.467 kb on + strand, within IAI46_06550at 1396.468 kb on - strand, within IAI46_06550at 1396.469 kb on + strand, within IAI46_06550at 1396.470 kb on - strand, within IAI46_06550at 1396.656 kb on + strand, within IAI46_06550at 1396.671 kb on + strand, within IAI46_06550at 1396.671 kb on + strand, within IAI46_06550at 1396.671 kb on + strand, within IAI46_06550at 1396.671 kb on + strand, within IAI46_06550at 1396.672 kb on - strand, within IAI46_06550at 1396.672 kb on - strand, within IAI46_06550at 1396.757 kb on + strand, within IAI46_06550at 1396.758 kb on - strand, within IAI46_06550at 1396.852 kb on - strand, within IAI46_06550at 1396.852 kb on - strand, within IAI46_06550at 1396.852 kb on - strand, within IAI46_06550at 1396.860 kb on + strand, within IAI46_06550at 1396.908 kb on + strand, within IAI46_06550at 1396.909 kb on - strand, within IAI46_06550at 1396.977 kb on + strand, within IAI46_06550at 1396.977 kb on + strand, within IAI46_06550at 1396.978 kb on - strand, within IAI46_06550at 1396.978 kb on - strand, within IAI46_06550at 1397.093 kb on + strand, within IAI46_06550at 1397.093 kb on + strand, within IAI46_06550at 1397.094 kb on - strand, within IAI46_06550at 1397.094 kb on - strand, within IAI46_06550at 1397.094 kb on - strand, within IAI46_06550at 1397.097 kb on + strand, within IAI46_06550at 1397.097 kb on + strand, within IAI46_06550at 1397.097 kb on + strand, within IAI46_06550at 1397.097 kb on + strand, within IAI46_06550at 1397.097 kb on + strand, within IAI46_06550at 1397.097 kb on + strand, within IAI46_06550at 1397.097 kb on + strand, within IAI46_06550at 1397.097 kb on + strand, within IAI46_06550at 1397.098 kb on - strand, within IAI46_06550at 1397.098 kb on - strand, within IAI46_06550at 1397.098 kb on - strand, within IAI46_06550at 1397.098 kb on - strand, within IAI46_06550at 1397.098 kb on - strand, within IAI46_06550at 1397.098 kb on - strand, within IAI46_06550at 1397.098 kb on - strand, within IAI46_06550at 1397.150 kb on + strand, within IAI46_06550at 1397.349 kb on + strand, within IAI46_06550at 1397.350 kb on - strand, within IAI46_06550at 1397.558 kb on + strand, within IAI46_06550at 1397.576 kb on + strand, within IAI46_06550at 1397.576 kb on + strand, within IAI46_06550at 1397.576 kb on + strand, within IAI46_06550at 1397.577 kb on - strand, within IAI46_06550at 1397.583 kb on + strand, within IAI46_06550at 1397.583 kb on + strand, within IAI46_06550at 1397.584 kb on - strand, within IAI46_06550at 1397.680 kb on + strand, within IAI46_06550at 1397.680 kb on + strand, within IAI46_06550at 1397.847 kb on + strandat 1397.847 kb on + strandat 1397.847 kb on + strandat 1397.847 kb on + strandat 1397.847 kb on + strandat 1397.848 kb on - strandat 1397.848 kb on - strandat 1397.848 kb on - strandat 1397.848 kb on - strandat 1397.849 kb on + strandat 1397.979 kb on - strandat 1397.979 kb on - strandat 1397.979 kb on - strandat 1398.031 kb on - strandat 1398.107 kb on + strand, within IAI46_06555at 1398.246 kb on + strand, within IAI46_06555at 1398.304 kb on - strandat 1398.326 kb on - strandat 1398.326 kb on - strandat 1398.380 kb on + strandat 1398.548 kb on - strand, within IAI46_06560at 1398.572 kb on + strand, within IAI46_06560at 1398.573 kb on - strand, within IAI46_06560at 1398.579 kb on + strand, within IAI46_06560at 1398.580 kb on - strand, within IAI46_06560at 1398.610 kb on - strand, within IAI46_06560at 1398.690 kb on + strand, within IAI46_06560at 1398.901 kb on + strand, within IAI46_06560at 1398.902 kb on - strand, within IAI46_06560

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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1,394,935 + +0.6
1,394,935 + -0.7
1,394,935 + +0.8
1,394,935 + +0.7
1,394,935 + -0.6
1,394,935 + -0.9
1,394,936 - +0.6
1,394,936 - +0.6
1,394,936 - +1.5
1,394,939 + +0.2
1,394,940 - -0.4
1,394,956 + +0.7
1,394,957 - -0.7
1,394,987 + -0.0
1,394,987 + -0.8
1,395,012 + -0.6
1,395,097 + -0.9
1,395,098 - -1.6
1,395,131 + +0.7
1,395,147 - -0.0
1,395,203 + -0.6
1,395,272 + +0.1
1,395,272 + -0.1
1,395,273 - +1.5
1,395,310 - +0.1
1,395,310 - +0.4
1,395,348 + -0.9
1,395,355 - +0.3
1,395,355 - +0.3
1,395,376 - -0.5
1,395,513 - +0.5
1,395,628 + +0.1
1,395,668 + -1.1
1,395,674 + -0.7
1,395,675 - -0.8
1,395,680 - -0.3
1,395,852 + -1.3
1,395,853 - +0.2
1,395,853 - -0.8
1,395,856 + +2.0
1,395,857 - -2.9
1,395,857 - -0.9
1,395,992 + -0.1
1,396,036 + -0.1
1,396,036 + +0.9
1,396,045 + +1.0
1,396,125 - -0.6
1,396,146 + IAI46_06550 0.11 -0.2
1,396,147 - IAI46_06550 0.11 +0.7
1,396,147 - IAI46_06550 0.11 -1.3
1,396,203 + IAI46_06550 0.14 +0.1
1,396,204 - IAI46_06550 0.14 -0.5
1,396,204 - IAI46_06550 0.14 +0.9
1,396,204 - IAI46_06550 0.14 -0.2
1,396,204 - IAI46_06550 0.14 -0.9
1,396,204 - IAI46_06550 0.14 +1.1
1,396,209 + IAI46_06550 0.14 +0.6
1,396,209 + IAI46_06550 0.14 +0.5
1,396,209 + IAI46_06550 0.14 -0.8
1,396,209 + IAI46_06550 0.14 -1.1
1,396,210 - IAI46_06550 0.14 -0.9
1,396,212 + IAI46_06550 0.14 +0.5
1,396,213 - IAI46_06550 0.14 -1.2
1,396,227 + IAI46_06550 0.15 -0.1
1,396,227 + IAI46_06550 0.15 +0.7
1,396,227 + IAI46_06550 0.15 +0.7
1,396,227 + IAI46_06550 0.15 -0.5
1,396,228 - IAI46_06550 0.15 -1.1
1,396,386 + IAI46_06550 0.23 -0.0
1,396,467 + IAI46_06550 0.27 +0.4
1,396,467 + IAI46_06550 0.27 -0.6
1,396,468 - IAI46_06550 0.27 -0.8
1,396,469 + IAI46_06550 0.27 +1.5
1,396,470 - IAI46_06550 0.27 -0.1
1,396,656 + IAI46_06550 0.36 +0.8
1,396,671 + IAI46_06550 0.37 -0.3
1,396,671 + IAI46_06550 0.37 +1.3
1,396,671 + IAI46_06550 0.37 +0.7
1,396,671 + IAI46_06550 0.37 +0.1
1,396,672 - IAI46_06550 0.37 +0.4
1,396,672 - IAI46_06550 0.37 -0.1
1,396,757 + IAI46_06550 0.41 +0.4
1,396,758 - IAI46_06550 0.41 +1.1
1,396,852 - IAI46_06550 0.46 -0.2
1,396,852 - IAI46_06550 0.46 +0.6
1,396,852 - IAI46_06550 0.46 -0.2
1,396,860 + IAI46_06550 0.46 +0.3
1,396,908 + IAI46_06550 0.49 +0.0
1,396,909 - IAI46_06550 0.49 -0.5
1,396,977 + IAI46_06550 0.52 +0.0
1,396,977 + IAI46_06550 0.52 +0.4
1,396,978 - IAI46_06550 0.52 -1.2
1,396,978 - IAI46_06550 0.52 -0.0
1,397,093 + IAI46_06550 0.58 +0.1
1,397,093 + IAI46_06550 0.58 +0.3
1,397,094 - IAI46_06550 0.58 -1.4
1,397,094 - IAI46_06550 0.58 +0.2
1,397,094 - IAI46_06550 0.58 +0.9
1,397,097 + IAI46_06550 0.58 -0.2
1,397,097 + IAI46_06550 0.58 -0.2
1,397,097 + IAI46_06550 0.58 +0.1
1,397,097 + IAI46_06550 0.58 +0.3
1,397,097 + IAI46_06550 0.58 +0.2
1,397,097 + IAI46_06550 0.58 -0.3
1,397,097 + IAI46_06550 0.58 +0.3
1,397,097 + IAI46_06550 0.58 +0.5
1,397,098 - IAI46_06550 0.58 -0.7
1,397,098 - IAI46_06550 0.58 -0.3
1,397,098 - IAI46_06550 0.58 +0.5
1,397,098 - IAI46_06550 0.58 -0.3
1,397,098 - IAI46_06550 0.58 +0.2
1,397,098 - IAI46_06550 0.58 -0.3
1,397,098 - IAI46_06550 0.58 -0.9
1,397,150 + IAI46_06550 0.61 -1.0
1,397,349 + IAI46_06550 0.71 +0.3
1,397,350 - IAI46_06550 0.71 -0.7
1,397,558 + IAI46_06550 0.81 -0.9
1,397,576 + IAI46_06550 0.82 -0.5
1,397,576 + IAI46_06550 0.82 +0.0
1,397,576 + IAI46_06550 0.82 +1.2
1,397,577 - IAI46_06550 0.82 -0.6
1,397,583 + IAI46_06550 0.82 +0.0
1,397,583 + IAI46_06550 0.82 -1.0
1,397,584 - IAI46_06550 0.82 +0.9
1,397,680 + IAI46_06550 0.87 +0.0
1,397,680 + IAI46_06550 0.87 +0.5
1,397,847 + -0.4
1,397,847 + +0.3
1,397,847 + +0.4
1,397,847 + +0.9
1,397,847 + +0.5
1,397,848 - +2.4
1,397,848 - -1.2
1,397,848 - -0.1
1,397,848 - +0.0
1,397,849 + -1.7
1,397,979 - +0.0
1,397,979 - -0.0
1,397,979 - -0.6
1,398,031 - -1.2
1,398,107 + IAI46_06555 0.23 +0.0
1,398,246 + IAI46_06555 0.77 +1.6
1,398,304 - -1.6
1,398,326 - -0.9
1,398,326 - -0.2
1,398,380 + -0.6
1,398,548 - IAI46_06560 0.26 +0.3
1,398,572 + IAI46_06560 0.29 -0.7
1,398,573 - IAI46_06560 0.29 -0.1
1,398,579 + IAI46_06560 0.29 +0.8
1,398,580 - IAI46_06560 0.29 -0.4
1,398,610 - IAI46_06560 0.33 +0.1
1,398,690 + IAI46_06560 0.41 -0.1
1,398,901 + IAI46_06560 0.64 +1.2
1,398,902 - IAI46_06560 0.64 -0.0

Or see this region's nucleotide sequence