Strain Fitness in Serratia liquefaciens MT49 around IAI46_05995

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05985 and IAI46_05990 overlap by 1 nucleotidesIAI46_05990 and IAI46_05995 are separated by 211 nucleotidesIAI46_05995 and IAI46_06000 are separated by 415 nucleotides IAI46_05985: IAI46_05985 - glutamate/aspartate ABC transporter permease GltK, at 1,281,874 to 1,282,548 _05985 IAI46_05990: IAI46_05990 - amino acid ABC transporter permease, at 1,282,548 to 1,283,288 _05990 IAI46_05995: IAI46_05995 - amino acid ABC transporter substrate-binding protein, at 1,283,500 to 1,284,396 _05995 IAI46_06000: IAI46_06000 - apolipoprotein N-acyltransferase, at 1,284,812 to 1,286,341 _06000 Position (kb) 1283 1284 1285Strain fitness (log2 ratio) -2 -1 0 1at 1282.505 kb on + strandat 1282.505 kb on + strandat 1282.506 kb on - strandat 1282.544 kb on + strandat 1282.549 kb on + strandat 1282.549 kb on + strandat 1282.549 kb on + strandat 1282.549 kb on + strandat 1282.602 kb on - strandat 1282.632 kb on - strand, within IAI46_05990at 1282.633 kb on + strand, within IAI46_05990at 1282.633 kb on + strand, within IAI46_05990at 1282.633 kb on + strand, within IAI46_05990at 1282.634 kb on - strand, within IAI46_05990at 1282.634 kb on - strand, within IAI46_05990at 1282.663 kb on + strand, within IAI46_05990at 1282.679 kb on - strand, within IAI46_05990at 1282.817 kb on - strand, within IAI46_05990at 1282.817 kb on - strand, within IAI46_05990at 1282.970 kb on + strand, within IAI46_05990at 1282.971 kb on - strand, within IAI46_05990at 1283.035 kb on + strand, within IAI46_05990at 1283.035 kb on + strand, within IAI46_05990at 1283.035 kb on + strand, within IAI46_05990at 1283.069 kb on + strand, within IAI46_05990at 1283.136 kb on - strand, within IAI46_05990at 1283.227 kb on + strandat 1283.227 kb on + strandat 1283.227 kb on + strandat 1283.228 kb on - strandat 1283.280 kb on + strandat 1283.280 kb on + strandat 1283.281 kb on - strandat 1283.281 kb on - strandat 1283.320 kb on + strandat 1283.334 kb on + strandat 1283.334 kb on + strandat 1283.334 kb on + strandat 1283.335 kb on - strandat 1283.373 kb on + strandat 1283.373 kb on + strandat 1283.373 kb on + strandat 1283.374 kb on - strandat 1283.374 kb on - strandat 1283.374 kb on - strandat 1283.374 kb on - strandat 1283.374 kb on - strandat 1283.374 kb on - strandat 1283.433 kb on + strandat 1283.520 kb on + strandat 1283.589 kb on + strandat 1283.607 kb on + strand, within IAI46_05995at 1283.607 kb on + strand, within IAI46_05995at 1283.607 kb on + strand, within IAI46_05995at 1283.608 kb on - strand, within IAI46_05995at 1283.700 kb on + strand, within IAI46_05995at 1283.700 kb on + strand, within IAI46_05995at 1283.701 kb on - strand, within IAI46_05995at 1283.709 kb on - strand, within IAI46_05995at 1283.709 kb on - strand, within IAI46_05995at 1283.802 kb on + strand, within IAI46_05995at 1283.802 kb on + strand, within IAI46_05995at 1283.803 kb on - strand, within IAI46_05995at 1283.809 kb on + strand, within IAI46_05995at 1283.902 kb on - strand, within IAI46_05995at 1284.242 kb on + strand, within IAI46_05995at 1284.243 kb on - strand, within IAI46_05995at 1284.316 kb on - strandat 1284.340 kb on + strandat 1284.340 kb on + strandat 1284.345 kb on + strandat 1284.473 kb on - strandat 1284.473 kb on - strandat 1284.473 kb on - strandat 1284.473 kb on - strandat 1284.480 kb on + strandat 1284.480 kb on + strandat 1284.486 kb on + strandat 1284.486 kb on + strandat 1284.486 kb on + strandat 1284.486 kb on + strandat 1284.487 kb on - strandat 1284.487 kb on - strandat 1284.496 kb on - strandat 1284.573 kb on + strandat 1284.651 kb on + strandat 1284.652 kb on - strandat 1284.681 kb on - strandat 1284.726 kb on + strandat 1284.726 kb on + strandat 1284.726 kb on + strandat 1284.727 kb on - strandat 1284.740 kb on - strandat 1284.813 kb on + strandat 1284.814 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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1,282,505 + +0.8
1,282,505 + -1.2
1,282,506 - +0.2
1,282,544 + -0.4
1,282,549 + +0.8
1,282,549 + +0.2
1,282,549 + +0.1
1,282,549 + +0.5
1,282,602 - +1.2
1,282,632 - IAI46_05990 0.11 +0.2
1,282,633 + IAI46_05990 0.11 +0.3
1,282,633 + IAI46_05990 0.11 -1.0
1,282,633 + IAI46_05990 0.11 +0.1
1,282,634 - IAI46_05990 0.12 -0.1
1,282,634 - IAI46_05990 0.12 +0.1
1,282,663 + IAI46_05990 0.16 +0.8
1,282,679 - IAI46_05990 0.18 +0.6
1,282,817 - IAI46_05990 0.36 +0.9
1,282,817 - IAI46_05990 0.36 -0.1
1,282,970 + IAI46_05990 0.57 -0.0
1,282,971 - IAI46_05990 0.57 -0.9
1,283,035 + IAI46_05990 0.66 +0.0
1,283,035 + IAI46_05990 0.66 +0.5
1,283,035 + IAI46_05990 0.66 +0.8
1,283,069 + IAI46_05990 0.70 +0.5
1,283,136 - IAI46_05990 0.79 -0.5
1,283,227 + +0.3
1,283,227 + +0.7
1,283,227 + -0.1
1,283,228 - +1.4
1,283,280 + -0.2
1,283,280 + +0.9
1,283,281 - +1.4
1,283,281 - -0.3
1,283,320 + +0.4
1,283,334 + +0.2
1,283,334 + -0.5
1,283,334 + -0.1
1,283,335 - +1.3
1,283,373 + +0.9
1,283,373 + -0.4
1,283,373 + +0.4
1,283,374 - +0.1
1,283,374 - -0.6
1,283,374 - -1.2
1,283,374 - -2.3
1,283,374 - -0.7
1,283,374 - -1.9
1,283,433 + -0.3
1,283,520 + +0.3
1,283,589 + -0.6
1,283,607 + IAI46_05995 0.12 +0.2
1,283,607 + IAI46_05995 0.12 +0.7
1,283,607 + IAI46_05995 0.12 -1.3
1,283,608 - IAI46_05995 0.12 -1.2
1,283,700 + IAI46_05995 0.22 -0.4
1,283,700 + IAI46_05995 0.22 +0.9
1,283,701 - IAI46_05995 0.22 -0.5
1,283,709 - IAI46_05995 0.23 -0.2
1,283,709 - IAI46_05995 0.23 +0.3
1,283,802 + IAI46_05995 0.34 +0.1
1,283,802 + IAI46_05995 0.34 +0.8
1,283,803 - IAI46_05995 0.34 -0.7
1,283,809 + IAI46_05995 0.34 +0.3
1,283,902 - IAI46_05995 0.45 -0.2
1,284,242 + IAI46_05995 0.83 +0.2
1,284,243 - IAI46_05995 0.83 -0.2
1,284,316 - +0.2
1,284,340 + -1.8
1,284,340 + -0.4
1,284,345 + -2.2
1,284,473 - +0.7
1,284,473 - +0.3
1,284,473 - +0.6
1,284,473 - -0.0
1,284,480 + -0.2
1,284,480 + -0.4
1,284,486 + +0.5
1,284,486 + +0.5
1,284,486 + +0.4
1,284,486 + -0.7
1,284,487 - -1.9
1,284,487 - +0.4
1,284,496 - -0.1
1,284,573 + -0.4
1,284,651 + -0.0
1,284,652 - -0.7
1,284,681 - -0.4
1,284,726 + -0.3
1,284,726 + -0.2
1,284,726 + -0.2
1,284,727 - -0.2
1,284,740 - -0.3
1,284,813 + +0.1
1,284,814 - -0.4

Or see this region's nucleotide sequence