Strain Fitness in Serratia liquefaciens MT49 around IAI46_05745

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05740 and IAI46_05745 are separated by 205 nucleotidesIAI46_05745 and IAI46_05750 are separated by 56 nucleotides IAI46_05740: IAI46_05740 - LysR family transcriptional regulator, at 1,235,252 to 1,236,139 _05740 IAI46_05745: IAI46_05745 - gamma-glutamylcyclotransferase, at 1,236,345 to 1,236,671 _05745 IAI46_05750: IAI46_05750 - amidohydrolase, at 1,236,728 to 1,237,723 _05750 Position (kb) 1236 1237Strain fitness (log2 ratio) -2 -1 0 1 2at 1235.401 kb on + strand, within IAI46_05740at 1235.402 kb on - strand, within IAI46_05740at 1235.402 kb on - strand, within IAI46_05740at 1235.443 kb on - strand, within IAI46_05740at 1235.530 kb on - strand, within IAI46_05740at 1235.530 kb on - strand, within IAI46_05740at 1235.591 kb on - strand, within IAI46_05740at 1235.623 kb on + strand, within IAI46_05740at 1235.624 kb on - strand, within IAI46_05740at 1235.682 kb on + strand, within IAI46_05740at 1235.709 kb on + strand, within IAI46_05740at 1235.709 kb on + strand, within IAI46_05740at 1235.709 kb on + strand, within IAI46_05740at 1235.709 kb on + strand, within IAI46_05740at 1235.709 kb on + strand, within IAI46_05740at 1235.709 kb on + strand, within IAI46_05740at 1235.709 kb on + strand, within IAI46_05740at 1235.709 kb on + strand, within IAI46_05740at 1235.710 kb on - strand, within IAI46_05740at 1235.710 kb on - strand, within IAI46_05740at 1235.739 kb on + strand, within IAI46_05740at 1235.740 kb on - strand, within IAI46_05740at 1235.842 kb on + strand, within IAI46_05740at 1235.843 kb on - strand, within IAI46_05740at 1235.892 kb on + strand, within IAI46_05740at 1235.892 kb on + strand, within IAI46_05740at 1235.893 kb on - strand, within IAI46_05740at 1235.893 kb on - strand, within IAI46_05740at 1235.893 kb on - strand, within IAI46_05740at 1235.894 kb on + strand, within IAI46_05740at 1235.894 kb on + strand, within IAI46_05740at 1235.894 kb on + strand, within IAI46_05740at 1235.894 kb on + strand, within IAI46_05740at 1235.894 kb on + strand, within IAI46_05740at 1235.894 kb on + strand, within IAI46_05740at 1235.894 kb on + strand, within IAI46_05740at 1235.894 kb on + strand, within IAI46_05740at 1235.895 kb on - strand, within IAI46_05740at 1235.895 kb on - strand, within IAI46_05740at 1235.895 kb on - strand, within IAI46_05740at 1235.895 kb on - strand, within IAI46_05740at 1235.895 kb on - strand, within IAI46_05740at 1235.896 kb on + strand, within IAI46_05740at 1235.897 kb on - strand, within IAI46_05740at 1235.897 kb on - strand, within IAI46_05740at 1235.912 kb on - strand, within IAI46_05740at 1236.037 kb on - strand, within IAI46_05740at 1236.056 kb on - strandat 1236.062 kb on + strandat 1236.063 kb on - strandat 1236.127 kb on + strandat 1236.127 kb on + strandat 1236.198 kb on + strandat 1236.284 kb on + strandat 1236.307 kb on + strandat 1236.308 kb on - strandat 1236.317 kb on - strandat 1236.341 kb on + strandat 1236.341 kb on + strandat 1236.341 kb on + strandat 1236.341 kb on + strandat 1236.342 kb on - strandat 1236.342 kb on - strandat 1236.374 kb on - strandat 1236.483 kb on + strand, within IAI46_05745at 1236.503 kb on + strand, within IAI46_05745at 1236.621 kb on - strand, within IAI46_05745at 1236.654 kb on + strandat 1236.654 kb on + strandat 1236.655 kb on - strandat 1236.655 kb on - strandat 1236.688 kb on + strandat 1236.688 kb on + strandat 1236.688 kb on + strandat 1236.784 kb on + strandat 1236.785 kb on - strandat 1236.890 kb on - strand, within IAI46_05750at 1236.968 kb on - strand, within IAI46_05750at 1237.032 kb on + strand, within IAI46_05750at 1237.178 kb on - strand, within IAI46_05750at 1237.199 kb on - strand, within IAI46_05750at 1237.211 kb on + strand, within IAI46_05750at 1237.212 kb on - strand, within IAI46_05750at 1237.212 kb on - strand, within IAI46_05750at 1237.212 kb on - strand, within IAI46_05750at 1237.212 kb on - strand, within IAI46_05750at 1237.289 kb on + strand, within IAI46_05750at 1237.297 kb on + strand, within IAI46_05750at 1237.297 kb on + strand, within IAI46_05750at 1237.297 kb on + strand, within IAI46_05750at 1237.301 kb on + strand, within IAI46_05750at 1237.482 kb on + strand, within IAI46_05750at 1237.483 kb on - strand, within IAI46_05750at 1237.578 kb on + strand, within IAI46_05750at 1237.578 kb on + strand, within IAI46_05750at 1237.597 kb on + strand, within IAI46_05750at 1237.597 kb on + strand, within IAI46_05750at 1237.597 kb on + strand, within IAI46_05750

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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1,235,401 + IAI46_05740 0.17 -0.6
1,235,402 - IAI46_05740 0.17 -0.6
1,235,402 - IAI46_05740 0.17 +0.3
1,235,443 - IAI46_05740 0.22 -1.1
1,235,530 - IAI46_05740 0.31 +0.9
1,235,530 - IAI46_05740 0.31 -0.8
1,235,591 - IAI46_05740 0.38 -1.0
1,235,623 + IAI46_05740 0.42 +1.5
1,235,624 - IAI46_05740 0.42 +0.1
1,235,682 + IAI46_05740 0.48 -0.3
1,235,709 + IAI46_05740 0.51 +0.2
1,235,709 + IAI46_05740 0.51 -1.1
1,235,709 + IAI46_05740 0.51 -0.1
1,235,709 + IAI46_05740 0.51 -0.3
1,235,709 + IAI46_05740 0.51 -0.9
1,235,709 + IAI46_05740 0.51 -0.1
1,235,709 + IAI46_05740 0.51 -0.2
1,235,709 + IAI46_05740 0.51 -1.1
1,235,710 - IAI46_05740 0.52 +1.2
1,235,710 - IAI46_05740 0.52 +0.8
1,235,739 + IAI46_05740 0.55 +1.2
1,235,740 - IAI46_05740 0.55 +0.4
1,235,842 + IAI46_05740 0.66 +0.4
1,235,843 - IAI46_05740 0.67 +1.1
1,235,892 + IAI46_05740 0.72 +1.8
1,235,892 + IAI46_05740 0.72 -2.2
1,235,893 - IAI46_05740 0.72 -0.1
1,235,893 - IAI46_05740 0.72 -0.6
1,235,893 - IAI46_05740 0.72 +0.0
1,235,894 + IAI46_05740 0.72 -0.4
1,235,894 + IAI46_05740 0.72 -0.1
1,235,894 + IAI46_05740 0.72 -0.5
1,235,894 + IAI46_05740 0.72 +0.3
1,235,894 + IAI46_05740 0.72 +0.2
1,235,894 + IAI46_05740 0.72 -1.5
1,235,894 + IAI46_05740 0.72 -0.4
1,235,894 + IAI46_05740 0.72 +0.9
1,235,895 - IAI46_05740 0.72 +0.4
1,235,895 - IAI46_05740 0.72 +0.5
1,235,895 - IAI46_05740 0.72 -1.8
1,235,895 - IAI46_05740 0.72 +0.3
1,235,895 - IAI46_05740 0.72 +0.4
1,235,896 + IAI46_05740 0.73 -0.1
1,235,897 - IAI46_05740 0.73 +0.9
1,235,897 - IAI46_05740 0.73 +0.8
1,235,912 - IAI46_05740 0.74 -1.4
1,236,037 - IAI46_05740 0.88 +0.5
1,236,056 - -1.1
1,236,062 + +0.8
1,236,063 - +1.0
1,236,127 + -0.9
1,236,127 + +0.6
1,236,198 + -0.2
1,236,284 + -0.6
1,236,307 + +0.0
1,236,308 - +1.1
1,236,317 - +1.6
1,236,341 + +1.2
1,236,341 + +0.6
1,236,341 + -0.0
1,236,341 + +0.5
1,236,342 - +1.2
1,236,342 - -0.9
1,236,374 - -0.5
1,236,483 + IAI46_05745 0.42 +0.5
1,236,503 + IAI46_05745 0.48 +0.3
1,236,621 - IAI46_05745 0.84 +1.0
1,236,654 + +0.3
1,236,654 + +0.0
1,236,655 - -0.5
1,236,655 - +0.4
1,236,688 + -0.7
1,236,688 + -0.6
1,236,688 + -1.1
1,236,784 + -0.2
1,236,785 - -0.4
1,236,890 - IAI46_05750 0.16 -0.7
1,236,968 - IAI46_05750 0.24 +0.4
1,237,032 + IAI46_05750 0.31 +0.3
1,237,178 - IAI46_05750 0.45 +0.9
1,237,199 - IAI46_05750 0.47 -1.7
1,237,211 + IAI46_05750 0.48 +0.8
1,237,212 - IAI46_05750 0.49 +1.2
1,237,212 - IAI46_05750 0.49 -0.4
1,237,212 - IAI46_05750 0.49 +0.5
1,237,212 - IAI46_05750 0.49 +0.2
1,237,289 + IAI46_05750 0.56 -0.6
1,237,297 + IAI46_05750 0.57 -0.2
1,237,297 + IAI46_05750 0.57 +0.1
1,237,297 + IAI46_05750 0.57 +0.4
1,237,301 + IAI46_05750 0.58 +0.0
1,237,482 + IAI46_05750 0.76 -0.3
1,237,483 - IAI46_05750 0.76 -0.1
1,237,578 + IAI46_05750 0.85 +0.4
1,237,578 + IAI46_05750 0.85 -1.6
1,237,597 + IAI46_05750 0.87 +0.4
1,237,597 + IAI46_05750 0.87 -0.4
1,237,597 + IAI46_05750 0.87 +0.0

Or see this region's nucleotide sequence