Strain Fitness in Serratia liquefaciens MT49 around IAI46_04480

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04475 and IAI46_04480 are separated by 154 nucleotidesIAI46_04480 and IAI46_04485 are separated by 46 nucleotides IAI46_04475: IAI46_04475 - TonB-dependent receptor, at 961,246 to 963,369 _04475 IAI46_04480: IAI46_04480 - condensation protein, at 963,524 to 966,460 _04480 IAI46_04485: IAI46_04485 - hypothetical protein, at 966,507 to 967,739 _04485 Position (kb) 963 964 965 966 967Strain fitness (log2 ratio) -2 -1 0 1 2at 962.636 kb on + strand, within IAI46_04475at 962.636 kb on + strand, within IAI46_04475at 962.710 kb on + strand, within IAI46_04475at 962.758 kb on + strand, within IAI46_04475at 962.759 kb on - strand, within IAI46_04475at 962.759 kb on - strand, within IAI46_04475at 962.765 kb on - strand, within IAI46_04475at 962.776 kb on + strand, within IAI46_04475at 962.777 kb on - strand, within IAI46_04475at 962.788 kb on + strand, within IAI46_04475at 962.789 kb on - strand, within IAI46_04475at 962.797 kb on + strand, within IAI46_04475at 962.798 kb on - strand, within IAI46_04475at 962.798 kb on - strand, within IAI46_04475at 962.798 kb on - strand, within IAI46_04475at 962.798 kb on - strand, within IAI46_04475at 962.851 kb on + strand, within IAI46_04475at 962.860 kb on + strand, within IAI46_04475at 962.860 kb on + strand, within IAI46_04475at 962.860 kb on + strand, within IAI46_04475at 962.927 kb on + strand, within IAI46_04475at 962.928 kb on - strand, within IAI46_04475at 962.928 kb on - strand, within IAI46_04475at 962.935 kb on + strand, within IAI46_04475at 963.041 kb on + strand, within IAI46_04475at 963.074 kb on - strand, within IAI46_04475at 963.075 kb on + strand, within IAI46_04475at 963.076 kb on - strand, within IAI46_04475at 963.097 kb on + strand, within IAI46_04475at 963.097 kb on + strand, within IAI46_04475at 963.098 kb on - strand, within IAI46_04475at 963.098 kb on - strand, within IAI46_04475at 963.151 kb on + strand, within IAI46_04475at 963.152 kb on - strand, within IAI46_04475at 963.154 kb on + strand, within IAI46_04475at 963.164 kb on - strandat 963.196 kb on + strandat 963.210 kb on + strandat 963.223 kb on + strandat 963.224 kb on - strandat 963.224 kb on - strandat 963.224 kb on - strandat 963.224 kb on - strandat 963.235 kb on + strandat 963.311 kb on - strandat 963.457 kb on - strandat 963.457 kb on - strandat 963.468 kb on + strandat 963.469 kb on - strandat 963.518 kb on - strandat 963.544 kb on + strandat 963.792 kb on - strandat 963.813 kb on + strandat 963.813 kb on + strandat 963.855 kb on + strand, within IAI46_04480at 963.855 kb on + strand, within IAI46_04480at 963.855 kb on + strand, within IAI46_04480at 963.856 kb on - strand, within IAI46_04480at 963.856 kb on - strand, within IAI46_04480at 963.856 kb on - strand, within IAI46_04480at 963.856 kb on - strand, within IAI46_04480at 963.886 kb on - strand, within IAI46_04480at 964.052 kb on + strand, within IAI46_04480at 964.052 kb on + strand, within IAI46_04480at 964.053 kb on - strand, within IAI46_04480at 964.053 kb on - strand, within IAI46_04480at 964.053 kb on - strand, within IAI46_04480at 964.054 kb on + strand, within IAI46_04480at 964.109 kb on - strand, within IAI46_04480at 964.109 kb on - strand, within IAI46_04480at 964.225 kb on + strand, within IAI46_04480at 964.225 kb on + strand, within IAI46_04480at 964.225 kb on + strand, within IAI46_04480at 964.225 kb on + strand, within IAI46_04480at 964.225 kb on + strand, within IAI46_04480at 964.225 kb on + strand, within IAI46_04480at 964.281 kb on + strand, within IAI46_04480at 964.582 kb on - strand, within IAI46_04480at 964.722 kb on - strand, within IAI46_04480at 964.959 kb on + strand, within IAI46_04480at 965.144 kb on + strand, within IAI46_04480at 965.263 kb on - strand, within IAI46_04480at 965.336 kb on + strand, within IAI46_04480at 965.338 kb on + strand, within IAI46_04480at 965.338 kb on + strand, within IAI46_04480at 965.339 kb on - strand, within IAI46_04480at 965.357 kb on + strand, within IAI46_04480at 965.358 kb on - strand, within IAI46_04480at 965.358 kb on - strand, within IAI46_04480at 965.616 kb on - strand, within IAI46_04480at 965.670 kb on - strand, within IAI46_04480at 965.670 kb on - strand, within IAI46_04480at 965.816 kb on + strand, within IAI46_04480at 965.817 kb on - strand, within IAI46_04480at 965.970 kb on - strand, within IAI46_04480at 966.065 kb on - strand, within IAI46_04480at 966.071 kb on + strand, within IAI46_04480at 966.071 kb on + strand, within IAI46_04480at 966.072 kb on - strand, within IAI46_04480at 966.072 kb on - strand, within IAI46_04480at 966.072 kb on - strand, within IAI46_04480at 966.079 kb on + strand, within IAI46_04480at 966.172 kb on + strandat 966.194 kb on - strandat 966.194 kb on - strandat 966.222 kb on - strandat 966.326 kb on + strandat 966.326 kb on + strandat 966.327 kb on - strandat 966.327 kb on - strandat 966.327 kb on - strandat 966.342 kb on - strandat 966.342 kb on - strandat 966.376 kb on + strandat 966.458 kb on + strandat 966.484 kb on - strandat 966.484 kb on - strandat 966.484 kb on - strandat 966.520 kb on + strandat 966.538 kb on + strandat 966.797 kb on - strand, within IAI46_04485at 966.825 kb on + strand, within IAI46_04485at 966.825 kb on + strand, within IAI46_04485at 966.930 kb on + strand, within IAI46_04485at 966.930 kb on + strand, within IAI46_04485at 966.930 kb on + strand, within IAI46_04485at 966.931 kb on - strand, within IAI46_04485at 966.983 kb on + strand, within IAI46_04485at 966.984 kb on - strand, within IAI46_04485at 966.984 kb on - strand, within IAI46_04485at 967.035 kb on + strand, within IAI46_04485at 967.035 kb on + strand, within IAI46_04485at 967.036 kb on - strand, within IAI46_04485at 967.036 kb on - strand, within IAI46_04485at 967.036 kb on - strand, within IAI46_04485at 967.036 kb on - strand, within IAI46_04485at 967.036 kb on - strand, within IAI46_04485at 967.088 kb on + strand, within IAI46_04485at 967.088 kb on + strand, within IAI46_04485at 967.088 kb on + strand, within IAI46_04485at 967.088 kb on + strand, within IAI46_04485at 967.089 kb on - strand, within IAI46_04485at 967.089 kb on - strand, within IAI46_04485at 967.195 kb on + strand, within IAI46_04485at 967.195 kb on + strand, within IAI46_04485at 967.196 kb on - strand, within IAI46_04485at 967.205 kb on + strand, within IAI46_04485at 967.205 kb on + strand, within IAI46_04485at 967.205 kb on + strand, within IAI46_04485at 967.206 kb on - strand, within IAI46_04485at 967.206 kb on - strand, within IAI46_04485at 967.299 kb on + strand, within IAI46_04485at 967.300 kb on - strand, within IAI46_04485at 967.300 kb on - strand, within IAI46_04485at 967.313 kb on + strand, within IAI46_04485at 967.314 kb on - strand, within IAI46_04485at 967.365 kb on - strand, within IAI46_04485at 967.383 kb on + strand, within IAI46_04485at 967.384 kb on - strand, within IAI46_04485at 967.384 kb on - strand, within IAI46_04485at 967.384 kb on - strand, within IAI46_04485

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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962,636 + IAI46_04475 0.65 +0.6
962,636 + IAI46_04475 0.65 +0.2
962,710 + IAI46_04475 0.69 +0.5
962,758 + IAI46_04475 0.71 -0.6
962,759 - IAI46_04475 0.71 -0.7
962,759 - IAI46_04475 0.71 -0.3
962,765 - IAI46_04475 0.72 +0.2
962,776 + IAI46_04475 0.72 +0.2
962,777 - IAI46_04475 0.72 +2.0
962,788 + IAI46_04475 0.73 -0.8
962,789 - IAI46_04475 0.73 -0.2
962,797 + IAI46_04475 0.73 -0.4
962,798 - IAI46_04475 0.73 +0.1
962,798 - IAI46_04475 0.73 +0.1
962,798 - IAI46_04475 0.73 +0.4
962,798 - IAI46_04475 0.73 +0.4
962,851 + IAI46_04475 0.76 -0.7
962,860 + IAI46_04475 0.76 -0.3
962,860 + IAI46_04475 0.76 +0.8
962,860 + IAI46_04475 0.76 +0.2
962,927 + IAI46_04475 0.79 +0.5
962,928 - IAI46_04475 0.79 +0.5
962,928 - IAI46_04475 0.79 +0.8
962,935 + IAI46_04475 0.80 +0.4
963,041 + IAI46_04475 0.85 +0.5
963,074 - IAI46_04475 0.86 +0.3
963,075 + IAI46_04475 0.86 +0.2
963,076 - IAI46_04475 0.86 +0.1
963,097 + IAI46_04475 0.87 -0.6
963,097 + IAI46_04475 0.87 +0.3
963,098 - IAI46_04475 0.87 -0.4
963,098 - IAI46_04475 0.87 -0.6
963,151 + IAI46_04475 0.90 -0.2
963,152 - IAI46_04475 0.90 -0.9
963,154 + IAI46_04475 0.90 +0.4
963,164 - +0.4
963,196 + -0.2
963,210 + -0.3
963,223 + -0.3
963,224 - -1.2
963,224 - -0.7
963,224 - -0.9
963,224 - +0.2
963,235 + +0.3
963,311 - +0.4
963,457 - +0.1
963,457 - -0.3
963,468 + -0.1
963,469 - -0.2
963,518 - -0.6
963,544 + +0.9
963,792 - +0.4
963,813 + +1.0
963,813 + -0.3
963,855 + IAI46_04480 0.11 +0.2
963,855 + IAI46_04480 0.11 +0.5
963,855 + IAI46_04480 0.11 +0.9
963,856 - IAI46_04480 0.11 +1.1
963,856 - IAI46_04480 0.11 +1.1
963,856 - IAI46_04480 0.11 +0.0
963,856 - IAI46_04480 0.11 -0.4
963,886 - IAI46_04480 0.12 +0.5
964,052 + IAI46_04480 0.18 +0.9
964,052 + IAI46_04480 0.18 +0.1
964,053 - IAI46_04480 0.18 -0.1
964,053 - IAI46_04480 0.18 +0.5
964,053 - IAI46_04480 0.18 -1.1
964,054 + IAI46_04480 0.18 +0.2
964,109 - IAI46_04480 0.20 -0.8
964,109 - IAI46_04480 0.20 -0.3
964,225 + IAI46_04480 0.24 -0.4
964,225 + IAI46_04480 0.24 -0.7
964,225 + IAI46_04480 0.24 +0.1
964,225 + IAI46_04480 0.24 +0.8
964,225 + IAI46_04480 0.24 -0.4
964,225 + IAI46_04480 0.24 +0.6
964,281 + IAI46_04480 0.26 +0.9
964,582 - IAI46_04480 0.36 +0.1
964,722 - IAI46_04480 0.41 -0.3
964,959 + IAI46_04480 0.49 +0.6
965,144 + IAI46_04480 0.55 -1.2
965,263 - IAI46_04480 0.59 -0.1
965,336 + IAI46_04480 0.62 -0.7
965,338 + IAI46_04480 0.62 +0.5
965,338 + IAI46_04480 0.62 -1.7
965,339 - IAI46_04480 0.62 +1.5
965,357 + IAI46_04480 0.62 +0.7
965,358 - IAI46_04480 0.62 -1.4
965,358 - IAI46_04480 0.62 -0.5
965,616 - IAI46_04480 0.71 -0.1
965,670 - IAI46_04480 0.73 +0.9
965,670 - IAI46_04480 0.73 -0.2
965,816 + IAI46_04480 0.78 +1.0
965,817 - IAI46_04480 0.78 -0.9
965,970 - IAI46_04480 0.83 +0.3
966,065 - IAI46_04480 0.87 +0.6
966,071 + IAI46_04480 0.87 -1.4
966,071 + IAI46_04480 0.87 +0.1
966,072 - IAI46_04480 0.87 -0.2
966,072 - IAI46_04480 0.87 -0.5
966,072 - IAI46_04480 0.87 -0.3
966,079 + IAI46_04480 0.87 +0.2
966,172 + +0.8
966,194 - +0.2
966,194 - -0.9
966,222 - +0.1
966,326 + +0.2
966,326 + -2.5
966,327 - -1.0
966,327 - +0.6
966,327 - -0.3
966,342 - -0.1
966,342 - -0.4
966,376 + -0.1
966,458 + +2.4
966,484 - -0.3
966,484 - -0.0
966,484 - -0.8
966,520 + +0.0
966,538 + +0.7
966,797 - IAI46_04485 0.24 +0.5
966,825 + IAI46_04485 0.26 -0.0
966,825 + IAI46_04485 0.26 +1.2
966,930 + IAI46_04485 0.34 +0.2
966,930 + IAI46_04485 0.34 -0.2
966,930 + IAI46_04485 0.34 -0.8
966,931 - IAI46_04485 0.34 -0.5
966,983 + IAI46_04485 0.39 +0.5
966,984 - IAI46_04485 0.39 -0.1
966,984 - IAI46_04485 0.39 -0.2
967,035 + IAI46_04485 0.43 +0.1
967,035 + IAI46_04485 0.43 +0.9
967,036 - IAI46_04485 0.43 +1.2
967,036 - IAI46_04485 0.43 +2.0
967,036 - IAI46_04485 0.43 +0.8
967,036 - IAI46_04485 0.43 +1.0
967,036 - IAI46_04485 0.43 -0.0
967,088 + IAI46_04485 0.47 -0.8
967,088 + IAI46_04485 0.47 +0.2
967,088 + IAI46_04485 0.47 +0.8
967,088 + IAI46_04485 0.47 +0.3
967,089 - IAI46_04485 0.47 +0.2
967,089 - IAI46_04485 0.47 +0.5
967,195 + IAI46_04485 0.56 +0.4
967,195 + IAI46_04485 0.56 -0.9
967,196 - IAI46_04485 0.56 +0.1
967,205 + IAI46_04485 0.57 -0.1
967,205 + IAI46_04485 0.57 +0.3
967,205 + IAI46_04485 0.57 +0.5
967,206 - IAI46_04485 0.57 +0.7
967,206 - IAI46_04485 0.57 -0.7
967,299 + IAI46_04485 0.64 -1.2
967,300 - IAI46_04485 0.64 -0.2
967,300 - IAI46_04485 0.64 -0.7
967,313 + IAI46_04485 0.65 -0.9
967,314 - IAI46_04485 0.65 +0.7
967,365 - IAI46_04485 0.70 +0.3
967,383 + IAI46_04485 0.71 +1.2
967,384 - IAI46_04485 0.71 -0.3
967,384 - IAI46_04485 0.71 -1.0
967,384 - IAI46_04485 0.71 +0.7

Or see this region's nucleotide sequence