Strain Fitness in Serratia liquefaciens MT49 around IAI46_04435

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04430 and IAI46_04435 are separated by 9 nucleotidesIAI46_04435 and IAI46_04440 are separated by 174 nucleotides IAI46_04430: IAI46_04430 - glutamate 5-kinase, at 947,767 to 948,870 _04430 IAI46_04435: IAI46_04435 - glutamate-5-semialdehyde dehydrogenase, at 948,880 to 950,133 _04435 IAI46_04440: IAI46_04440 - hypothetical protein, at 950,308 to 950,847 _04440 Position (kb) 948 949 950 951Strain fitness (log2 ratio) -2 -1 0 1at 948.151 kb on - strand, within IAI46_04430at 948.151 kb on - strand, within IAI46_04430at 948.151 kb on - strand, within IAI46_04430at 948.289 kb on + strand, within IAI46_04430at 948.306 kb on + strand, within IAI46_04430at 948.307 kb on - strand, within IAI46_04430at 948.307 kb on - strand, within IAI46_04430at 948.310 kb on - strand, within IAI46_04430at 948.310 kb on - strand, within IAI46_04430at 948.501 kb on + strand, within IAI46_04430at 948.510 kb on + strand, within IAI46_04430at 948.755 kb on - strand, within IAI46_04430at 948.756 kb on + strand, within IAI46_04430at 948.820 kb on + strandat 948.827 kb on - strandat 948.855 kb on + strandat 948.855 kb on + strandat 948.860 kb on + strandat 948.868 kb on + strandat 948.869 kb on - strandat 948.885 kb on - strandat 949.026 kb on + strand, within IAI46_04435at 949.027 kb on - strand, within IAI46_04435at 949.080 kb on - strand, within IAI46_04435at 949.314 kb on + strand, within IAI46_04435at 949.330 kb on - strand, within IAI46_04435at 949.464 kb on + strand, within IAI46_04435at 949.465 kb on - strand, within IAI46_04435at 949.561 kb on + strand, within IAI46_04435at 949.561 kb on + strand, within IAI46_04435at 949.561 kb on + strand, within IAI46_04435at 949.561 kb on + strand, within IAI46_04435at 949.562 kb on - strand, within IAI46_04435at 949.562 kb on - strand, within IAI46_04435at 949.638 kb on + strand, within IAI46_04435at 949.804 kb on + strand, within IAI46_04435at 949.804 kb on + strand, within IAI46_04435at 949.970 kb on + strand, within IAI46_04435at 949.970 kb on + strand, within IAI46_04435at 949.970 kb on + strand, within IAI46_04435at 949.970 kb on + strand, within IAI46_04435at 949.972 kb on + strand, within IAI46_04435at 949.973 kb on - strand, within IAI46_04435at 949.973 kb on - strand, within IAI46_04435at 949.973 kb on - strand, within IAI46_04435at 950.092 kb on + strandat 950.093 kb on - strandat 950.131 kb on + strandat 950.132 kb on - strandat 950.139 kb on - strandat 950.142 kb on - strandat 950.142 kb on - strandat 950.142 kb on - strandat 950.161 kb on + strandat 950.162 kb on - strandat 950.190 kb on + strandat 950.191 kb on + strandat 950.221 kb on + strandat 950.264 kb on - strandat 950.322 kb on + strandat 950.380 kb on - strand, within IAI46_04440at 950.381 kb on + strand, within IAI46_04440at 950.389 kb on - strand, within IAI46_04440at 950.450 kb on + strand, within IAI46_04440at 950.451 kb on - strand, within IAI46_04440at 950.498 kb on + strand, within IAI46_04440at 950.509 kb on + strand, within IAI46_04440at 950.525 kb on - strand, within IAI46_04440at 950.535 kb on + strand, within IAI46_04440at 950.535 kb on + strand, within IAI46_04440at 950.536 kb on - strand, within IAI46_04440at 950.604 kb on + strand, within IAI46_04440at 950.604 kb on + strand, within IAI46_04440at 950.605 kb on - strand, within IAI46_04440at 950.615 kb on + strand, within IAI46_04440at 950.616 kb on - strand, within IAI46_04440at 950.642 kb on + strand, within IAI46_04440at 950.643 kb on - strand, within IAI46_04440at 950.643 kb on - strand, within IAI46_04440at 950.725 kb on + strand, within IAI46_04440at 950.725 kb on + strand, within IAI46_04440at 950.726 kb on - strand, within IAI46_04440at 950.726 kb on - strand, within IAI46_04440at 950.770 kb on - strand, within IAI46_04440at 950.770 kb on - strand, within IAI46_04440at 950.886 kb on + strandat 950.942 kb on + strandat 950.943 kb on - strandat 950.943 kb on - strandat 950.975 kb on - strandat 951.068 kb on + strandat 951.068 kb on + strandat 951.104 kb on - strandat 951.104 kb on - strandat 951.107 kb on + strandat 951.120 kb on - strandat 951.121 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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948,151 - IAI46_04430 0.35 +0.8
948,151 - IAI46_04430 0.35 +0.0
948,151 - IAI46_04430 0.35 +0.1
948,289 + IAI46_04430 0.47 +0.7
948,306 + IAI46_04430 0.49 -0.4
948,307 - IAI46_04430 0.49 -0.1
948,307 - IAI46_04430 0.49 -1.2
948,310 - IAI46_04430 0.49 +0.2
948,310 - IAI46_04430 0.49 -1.7
948,501 + IAI46_04430 0.66 -0.6
948,510 + IAI46_04430 0.67 -0.5
948,755 - IAI46_04430 0.89 +0.6
948,756 + IAI46_04430 0.90 -1.4
948,820 + +0.0
948,827 - -0.0
948,855 + -0.0
948,855 + +0.9
948,860 + +1.2
948,868 + +0.8
948,869 - +0.9
948,885 - -0.9
949,026 + IAI46_04435 0.12 -0.5
949,027 - IAI46_04435 0.12 -0.6
949,080 - IAI46_04435 0.16 +1.4
949,314 + IAI46_04435 0.35 +0.1
949,330 - IAI46_04435 0.36 -0.3
949,464 + IAI46_04435 0.47 +0.8
949,465 - IAI46_04435 0.47 -0.2
949,561 + IAI46_04435 0.54 -0.9
949,561 + IAI46_04435 0.54 -0.8
949,561 + IAI46_04435 0.54 +0.3
949,561 + IAI46_04435 0.54 +0.5
949,562 - IAI46_04435 0.54 -0.2
949,562 - IAI46_04435 0.54 +0.9
949,638 + IAI46_04435 0.60 -0.7
949,804 + IAI46_04435 0.74 +0.6
949,804 + IAI46_04435 0.74 +0.5
949,970 + IAI46_04435 0.87 -1.1
949,970 + IAI46_04435 0.87 +0.5
949,970 + IAI46_04435 0.87 -0.2
949,970 + IAI46_04435 0.87 +0.3
949,972 + IAI46_04435 0.87 +1.2
949,973 - IAI46_04435 0.87 +0.2
949,973 - IAI46_04435 0.87 -1.0
949,973 - IAI46_04435 0.87 -0.7
950,092 + +0.3
950,093 - -0.9
950,131 + -0.3
950,132 - -0.8
950,139 - +0.5
950,142 - +0.1
950,142 - -0.2
950,142 - -0.9
950,161 + -1.8
950,162 - -0.6
950,190 + +0.8
950,191 + +0.4
950,221 + +0.0
950,264 - -0.4
950,322 + -1.1
950,380 - IAI46_04440 0.13 +0.1
950,381 + IAI46_04440 0.14 -0.3
950,389 - IAI46_04440 0.15 +0.2
950,450 + IAI46_04440 0.26 +0.7
950,451 - IAI46_04440 0.26 -0.2
950,498 + IAI46_04440 0.35 -0.4
950,509 + IAI46_04440 0.37 +0.8
950,525 - IAI46_04440 0.40 -0.6
950,535 + IAI46_04440 0.42 -0.2
950,535 + IAI46_04440 0.42 +1.0
950,536 - IAI46_04440 0.42 +0.7
950,604 + IAI46_04440 0.55 -0.3
950,604 + IAI46_04440 0.55 -0.2
950,605 - IAI46_04440 0.55 +1.0
950,615 + IAI46_04440 0.57 +0.4
950,616 - IAI46_04440 0.57 +0.8
950,642 + IAI46_04440 0.62 -0.2
950,643 - IAI46_04440 0.62 +0.7
950,643 - IAI46_04440 0.62 +0.8
950,725 + IAI46_04440 0.77 -0.3
950,725 + IAI46_04440 0.77 -1.0
950,726 - IAI46_04440 0.77 -0.7
950,726 - IAI46_04440 0.77 -0.3
950,770 - IAI46_04440 0.86 +0.2
950,770 - IAI46_04440 0.86 +1.7
950,886 + +0.3
950,942 + -1.1
950,943 - +0.2
950,943 - +0.8
950,975 - +1.7
951,068 + +0.8
951,068 + +0.0
951,104 - +1.3
951,104 - +1.5
951,107 + -0.1
951,120 - +0.4
951,121 + -0.3

Or see this region's nucleotide sequence