Strain Fitness in Serratia liquefaciens MT49 around IAI46_04130

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04125 and IAI46_04130 are separated by 62 nucleotidesIAI46_04130 and IAI46_04135 are separated by 71 nucleotidesIAI46_04135 and IAI46_04140 are separated by 44 nucleotides IAI46_04125: IAI46_04125 - endonuclease/exonuclease/phosphatase family protein, at 889,152 to 889,946 _04125 IAI46_04130: IAI46_04130 - murein transglycosylase D, at 890,009 to 891,394 _04130 IAI46_04135: IAI46_04135 - hydroxyacylglutathione hydrolase, at 891,466 to 892,221 _04135 IAI46_04140: IAI46_04140 - class I SAM-dependent methyltransferase, at 892,266 to 892,985 _04140 Position (kb) 890 891 892Strain fitness (log2 ratio) -2 -1 0 1 2at 889.017 kb on - strandat 889.044 kb on + strandat 889.044 kb on + strandat 889.044 kb on + strandat 889.045 kb on - strandat 889.046 kb on + strandat 889.046 kb on + strandat 889.046 kb on + strandat 889.087 kb on - strandat 889.087 kb on - strandat 889.130 kb on + strandat 889.130 kb on + strandat 889.131 kb on - strandat 889.131 kb on - strandat 889.148 kb on + strandat 889.167 kb on + strandat 889.167 kb on + strandat 889.168 kb on - strandat 889.179 kb on + strandat 889.179 kb on + strandat 889.179 kb on + strandat 889.180 kb on - strandat 889.180 kb on - strandat 889.180 kb on - strandat 889.180 kb on - strandat 889.220 kb on + strandat 889.221 kb on - strandat 889.221 kb on - strandat 889.221 kb on - strandat 889.223 kb on + strandat 889.257 kb on - strand, within IAI46_04125at 889.257 kb on - strand, within IAI46_04125at 889.295 kb on + strand, within IAI46_04125at 889.295 kb on + strand, within IAI46_04125at 889.413 kb on + strand, within IAI46_04125at 889.414 kb on - strand, within IAI46_04125at 889.414 kb on - strand, within IAI46_04125at 889.445 kb on - strand, within IAI46_04125at 889.497 kb on + strand, within IAI46_04125at 889.497 kb on + strand, within IAI46_04125at 889.497 kb on + strand, within IAI46_04125at 889.498 kb on - strand, within IAI46_04125at 889.498 kb on - strand, within IAI46_04125at 889.498 kb on - strand, within IAI46_04125at 889.498 kb on - strand, within IAI46_04125at 889.498 kb on - strand, within IAI46_04125at 889.563 kb on + strand, within IAI46_04125at 889.563 kb on + strand, within IAI46_04125at 889.564 kb on - strand, within IAI46_04125at 889.602 kb on - strand, within IAI46_04125at 889.638 kb on + strand, within IAI46_04125at 889.638 kb on + strand, within IAI46_04125at 889.638 kb on + strand, within IAI46_04125at 889.638 kb on + strand, within IAI46_04125at 889.639 kb on - strand, within IAI46_04125at 889.643 kb on + strand, within IAI46_04125at 889.644 kb on - strand, within IAI46_04125at 889.712 kb on + strand, within IAI46_04125at 889.764 kb on - strand, within IAI46_04125at 889.848 kb on - strand, within IAI46_04125at 889.895 kb on + strandat 889.896 kb on - strandat 890.029 kb on + strandat 890.030 kb on - strandat 890.113 kb on + strandat 890.116 kb on + strandat 890.116 kb on + strandat 890.140 kb on + strandat 890.173 kb on - strand, within IAI46_04130at 890.173 kb on - strand, within IAI46_04130at 890.179 kb on + strand, within IAI46_04130at 890.180 kb on - strand, within IAI46_04130at 890.232 kb on - strand, within IAI46_04130at 890.249 kb on + strand, within IAI46_04130at 890.249 kb on + strand, within IAI46_04130at 890.250 kb on - strand, within IAI46_04130at 890.250 kb on - strand, within IAI46_04130at 890.250 kb on - strand, within IAI46_04130at 890.250 kb on - strand, within IAI46_04130at 890.250 kb on - strand, within IAI46_04130at 890.285 kb on - strand, within IAI46_04130at 890.285 kb on - strand, within IAI46_04130at 890.332 kb on + strand, within IAI46_04130at 890.333 kb on - strand, within IAI46_04130at 890.333 kb on - strand, within IAI46_04130at 890.334 kb on + strand, within IAI46_04130at 890.335 kb on - strand, within IAI46_04130at 890.341 kb on + strand, within IAI46_04130at 890.341 kb on + strand, within IAI46_04130at 890.452 kb on + strand, within IAI46_04130at 890.453 kb on - strand, within IAI46_04130at 890.453 kb on - strand, within IAI46_04130at 890.453 kb on - strand, within IAI46_04130at 890.457 kb on + strand, within IAI46_04130at 890.457 kb on + strand, within IAI46_04130at 890.458 kb on - strand, within IAI46_04130at 890.458 kb on - strand, within IAI46_04130at 890.458 kb on - strand, within IAI46_04130at 890.493 kb on + strand, within IAI46_04130at 890.503 kb on + strand, within IAI46_04130at 890.503 kb on + strand, within IAI46_04130at 890.506 kb on - strand, within IAI46_04130at 890.555 kb on + strand, within IAI46_04130at 890.556 kb on - strand, within IAI46_04130at 890.562 kb on - strand, within IAI46_04130at 890.600 kb on - strand, within IAI46_04130at 890.600 kb on - strand, within IAI46_04130at 890.603 kb on - strand, within IAI46_04130at 890.628 kb on + strand, within IAI46_04130at 890.629 kb on - strand, within IAI46_04130at 890.645 kb on - strand, within IAI46_04130at 890.728 kb on + strand, within IAI46_04130at 890.740 kb on + strand, within IAI46_04130at 890.741 kb on - strand, within IAI46_04130at 890.750 kb on - strand, within IAI46_04130at 890.782 kb on + strand, within IAI46_04130at 890.782 kb on + strand, within IAI46_04130at 890.783 kb on - strand, within IAI46_04130at 890.783 kb on - strand, within IAI46_04130at 890.783 kb on - strand, within IAI46_04130at 890.783 kb on - strand, within IAI46_04130at 890.784 kb on + strand, within IAI46_04130at 890.802 kb on - strand, within IAI46_04130at 890.815 kb on + strand, within IAI46_04130at 890.816 kb on - strand, within IAI46_04130at 890.842 kb on + strand, within IAI46_04130at 890.843 kb on - strand, within IAI46_04130at 890.946 kb on - strand, within IAI46_04130at 891.000 kb on - strand, within IAI46_04130at 891.005 kb on + strand, within IAI46_04130at 891.005 kb on + strand, within IAI46_04130at 891.011 kb on + strand, within IAI46_04130at 891.029 kb on - strand, within IAI46_04130at 891.029 kb on - strand, within IAI46_04130at 891.040 kb on + strand, within IAI46_04130at 891.061 kb on - strand, within IAI46_04130at 891.061 kb on - strand, within IAI46_04130at 891.061 kb on - strand, within IAI46_04130at 891.066 kb on + strand, within IAI46_04130at 891.067 kb on - strand, within IAI46_04130at 891.067 kb on - strand, within IAI46_04130at 891.067 kb on - strand, within IAI46_04130at 891.081 kb on - strand, within IAI46_04130at 891.081 kb on - strand, within IAI46_04130at 891.081 kb on - strand, within IAI46_04130at 891.081 kb on - strand, within IAI46_04130at 891.087 kb on - strand, within IAI46_04130at 891.100 kb on - strand, within IAI46_04130at 891.214 kb on + strand, within IAI46_04130at 891.215 kb on - strand, within IAI46_04130at 891.215 kb on - strand, within IAI46_04130at 891.215 kb on - strand, within IAI46_04130at 891.215 kb on - strand, within IAI46_04130at 891.220 kb on + strand, within IAI46_04130at 891.220 kb on + strand, within IAI46_04130at 891.220 kb on + strand, within IAI46_04130at 891.221 kb on - strand, within IAI46_04130at 891.221 kb on - strand, within IAI46_04130at 891.224 kb on + strand, within IAI46_04130at 891.224 kb on + strand, within IAI46_04130at 891.261 kb on + strandat 891.262 kb on - strandat 891.356 kb on + strandat 891.356 kb on + strandat 891.386 kb on - strandat 891.416 kb on + strandat 891.451 kb on - strandat 891.595 kb on + strand, within IAI46_04135at 891.690 kb on + strand, within IAI46_04135at 891.720 kb on + strand, within IAI46_04135at 891.721 kb on - strand, within IAI46_04135at 891.721 kb on - strand, within IAI46_04135at 891.722 kb on + strand, within IAI46_04135at 891.742 kb on + strand, within IAI46_04135at 891.742 kb on + strand, within IAI46_04135at 891.743 kb on - strand, within IAI46_04135at 891.743 kb on - strand, within IAI46_04135at 891.785 kb on + strand, within IAI46_04135at 891.785 kb on + strand, within IAI46_04135at 891.785 kb on + strand, within IAI46_04135at 891.786 kb on - strand, within IAI46_04135at 891.857 kb on + strand, within IAI46_04135at 891.868 kb on - strand, within IAI46_04135at 891.870 kb on - strand, within IAI46_04135at 891.870 kb on - strand, within IAI46_04135at 891.879 kb on + strand, within IAI46_04135at 891.892 kb on - strand, within IAI46_04135at 891.998 kb on + strand, within IAI46_04135at 891.998 kb on + strand, within IAI46_04135at 891.998 kb on + strand, within IAI46_04135at 891.998 kb on + strand, within IAI46_04135at 891.998 kb on + strand, within IAI46_04135at 891.999 kb on - strand, within IAI46_04135at 892.016 kb on + strand, within IAI46_04135at 892.167 kb on + strandat 892.168 kb on - strandat 892.171 kb on + strandat 892.172 kb on - strandat 892.172 kb on - strandat 892.184 kb on + strandat 892.185 kb on - strandat 892.213 kb on - strandat 892.213 kb on - strandat 892.213 kb on - strandat 892.258 kb on - strandat 892.258 kb on - strandat 892.260 kb on + strandat 892.280 kb on + strandat 892.280 kb on + strandat 892.281 kb on - strandat 892.281 kb on - strandat 892.281 kb on - strandat 892.281 kb on - strandat 892.285 kb on + strandat 892.335 kb on + strandat 892.335 kb on + strandat 892.336 kb on - strandat 892.336 kb on - strandat 892.336 kb on - strandat 892.338 kb on + strand, within IAI46_04140at 892.338 kb on + strand, within IAI46_04140at 892.338 kb on + strand, within IAI46_04140at 892.339 kb on - strand, within IAI46_04140at 892.339 kb on - strand, within IAI46_04140at 892.339 kb on - strand, within IAI46_04140

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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889,017 - -0.3
889,044 + -0.1
889,044 + -0.0
889,044 + +1.6
889,045 - +0.2
889,046 + +0.1
889,046 + +0.2
889,046 + +0.1
889,087 - -0.7
889,087 - +1.0
889,130 + -0.1
889,130 + -1.3
889,131 - +0.2
889,131 - -1.3
889,148 + -0.1
889,167 + -0.2
889,167 + +0.5
889,168 - +1.5
889,179 + -0.4
889,179 + -1.5
889,179 + +2.0
889,180 - +1.1
889,180 - -2.0
889,180 - -0.1
889,180 - +0.6
889,220 + -1.5
889,221 - -0.9
889,221 - +1.0
889,221 - +0.0
889,223 + +0.1
889,257 - IAI46_04125 0.13 -0.6
889,257 - IAI46_04125 0.13 +0.3
889,295 + IAI46_04125 0.18 +1.1
889,295 + IAI46_04125 0.18 -0.2
889,413 + IAI46_04125 0.33 -0.3
889,414 - IAI46_04125 0.33 -0.9
889,414 - IAI46_04125 0.33 +0.6
889,445 - IAI46_04125 0.37 +0.2
889,497 + IAI46_04125 0.43 +0.5
889,497 + IAI46_04125 0.43 +0.0
889,497 + IAI46_04125 0.43 +0.5
889,498 - IAI46_04125 0.44 +0.4
889,498 - IAI46_04125 0.44 -1.9
889,498 - IAI46_04125 0.44 +0.2
889,498 - IAI46_04125 0.44 +0.2
889,498 - IAI46_04125 0.44 +0.3
889,563 + IAI46_04125 0.52 -0.6
889,563 + IAI46_04125 0.52 +0.4
889,564 - IAI46_04125 0.52 +0.2
889,602 - IAI46_04125 0.57 -0.4
889,638 + IAI46_04125 0.61 -0.2
889,638 + IAI46_04125 0.61 +0.5
889,638 + IAI46_04125 0.61 +0.2
889,638 + IAI46_04125 0.61 -0.4
889,639 - IAI46_04125 0.61 +0.9
889,643 + IAI46_04125 0.62 +0.3
889,644 - IAI46_04125 0.62 +0.4
889,712 + IAI46_04125 0.70 -0.6
889,764 - IAI46_04125 0.77 -0.6
889,848 - IAI46_04125 0.88 +0.8
889,895 + +0.9
889,896 - +0.9
890,029 + +0.2
890,030 - +0.6
890,113 + +1.8
890,116 + -0.2
890,116 + +0.5
890,140 + -1.7
890,173 - IAI46_04130 0.12 -0.4
890,173 - IAI46_04130 0.12 +1.2
890,179 + IAI46_04130 0.12 +0.3
890,180 - IAI46_04130 0.12 +2.1
890,232 - IAI46_04130 0.16 +0.4
890,249 + IAI46_04130 0.17 -0.6
890,249 + IAI46_04130 0.17 +0.1
890,250 - IAI46_04130 0.17 +1.0
890,250 - IAI46_04130 0.17 +0.5
890,250 - IAI46_04130 0.17 +0.1
890,250 - IAI46_04130 0.17 +0.9
890,250 - IAI46_04130 0.17 +1.7
890,285 - IAI46_04130 0.20 +0.2
890,285 - IAI46_04130 0.20 +0.6
890,332 + IAI46_04130 0.23 +1.0
890,333 - IAI46_04130 0.23 +0.2
890,333 - IAI46_04130 0.23 +0.8
890,334 + IAI46_04130 0.23 -1.1
890,335 - IAI46_04130 0.24 +0.4
890,341 + IAI46_04130 0.24 -0.3
890,341 + IAI46_04130 0.24 +0.3
890,452 + IAI46_04130 0.32 +0.8
890,453 - IAI46_04130 0.32 +0.2
890,453 - IAI46_04130 0.32 -1.7
890,453 - IAI46_04130 0.32 +0.3
890,457 + IAI46_04130 0.32 +0.2
890,457 + IAI46_04130 0.32 +0.9
890,458 - IAI46_04130 0.32 +0.4
890,458 - IAI46_04130 0.32 +0.2
890,458 - IAI46_04130 0.32 +0.5
890,493 + IAI46_04130 0.35 +0.7
890,503 + IAI46_04130 0.36 +0.4
890,503 + IAI46_04130 0.36 +0.3
890,506 - IAI46_04130 0.36 -0.1
890,555 + IAI46_04130 0.39 +1.0
890,556 - IAI46_04130 0.39 +0.4
890,562 - IAI46_04130 0.40 +0.3
890,600 - IAI46_04130 0.43 -0.1
890,600 - IAI46_04130 0.43 -0.5
890,603 - IAI46_04130 0.43 -0.7
890,628 + IAI46_04130 0.45 +1.0
890,629 - IAI46_04130 0.45 +0.1
890,645 - IAI46_04130 0.46 +0.5
890,728 + IAI46_04130 0.52 +0.7
890,740 + IAI46_04130 0.53 +0.2
890,741 - IAI46_04130 0.53 -0.3
890,750 - IAI46_04130 0.53 +0.4
890,782 + IAI46_04130 0.56 -0.8
890,782 + IAI46_04130 0.56 +0.5
890,783 - IAI46_04130 0.56 -0.4
890,783 - IAI46_04130 0.56 -0.7
890,783 - IAI46_04130 0.56 +1.0
890,783 - IAI46_04130 0.56 +0.2
890,784 + IAI46_04130 0.56 -0.0
890,802 - IAI46_04130 0.57 +0.4
890,815 + IAI46_04130 0.58 +0.3
890,816 - IAI46_04130 0.58 +0.6
890,842 + IAI46_04130 0.60 +0.2
890,843 - IAI46_04130 0.60 +0.1
890,946 - IAI46_04130 0.68 +0.7
891,000 - IAI46_04130 0.72 +0.0
891,005 + IAI46_04130 0.72 -0.9
891,005 + IAI46_04130 0.72 -0.4
891,011 + IAI46_04130 0.72 +0.5
891,029 - IAI46_04130 0.74 -0.5
891,029 - IAI46_04130 0.74 +0.7
891,040 + IAI46_04130 0.74 +0.0
891,061 - IAI46_04130 0.76 -0.2
891,061 - IAI46_04130 0.76 +0.2
891,061 - IAI46_04130 0.76 +0.9
891,066 + IAI46_04130 0.76 +0.1
891,067 - IAI46_04130 0.76 -0.4
891,067 - IAI46_04130 0.76 +1.1
891,067 - IAI46_04130 0.76 -0.1
891,081 - IAI46_04130 0.77 +0.1
891,081 - IAI46_04130 0.77 +0.7
891,081 - IAI46_04130 0.77 +1.1
891,081 - IAI46_04130 0.77 -1.4
891,087 - IAI46_04130 0.78 -0.1
891,100 - IAI46_04130 0.79 -0.1
891,214 + IAI46_04130 0.87 +0.8
891,215 - IAI46_04130 0.87 +0.2
891,215 - IAI46_04130 0.87 +0.3
891,215 - IAI46_04130 0.87 +0.6
891,215 - IAI46_04130 0.87 -0.4
891,220 + IAI46_04130 0.87 +0.5
891,220 + IAI46_04130 0.87 -0.5
891,220 + IAI46_04130 0.87 +1.2
891,221 - IAI46_04130 0.87 +0.6
891,221 - IAI46_04130 0.87 -1.3
891,224 + IAI46_04130 0.88 +0.7
891,224 + IAI46_04130 0.88 +1.6
891,261 + +0.3
891,262 - +0.7
891,356 + +0.6
891,356 + -0.2
891,386 - +0.7
891,416 + +0.2
891,451 - +0.2
891,595 + IAI46_04135 0.17 +0.7
891,690 + IAI46_04135 0.30 -0.8
891,720 + IAI46_04135 0.34 +0.1
891,721 - IAI46_04135 0.34 +0.8
891,721 - IAI46_04135 0.34 +0.8
891,722 + IAI46_04135 0.34 +0.3
891,742 + IAI46_04135 0.37 +0.1
891,742 + IAI46_04135 0.37 +0.6
891,743 - IAI46_04135 0.37 +0.1
891,743 - IAI46_04135 0.37 +0.8
891,785 + IAI46_04135 0.42 -0.2
891,785 + IAI46_04135 0.42 +0.9
891,785 + IAI46_04135 0.42 +0.4
891,786 - IAI46_04135 0.42 +0.3
891,857 + IAI46_04135 0.52 -0.2
891,868 - IAI46_04135 0.53 +0.7
891,870 - IAI46_04135 0.53 +0.1
891,870 - IAI46_04135 0.53 -0.3
891,879 + IAI46_04135 0.55 +0.5
891,892 - IAI46_04135 0.56 -0.0
891,998 + IAI46_04135 0.70 +0.4
891,998 + IAI46_04135 0.70 +0.2
891,998 + IAI46_04135 0.70 +0.2
891,998 + IAI46_04135 0.70 +0.2
891,998 + IAI46_04135 0.70 +0.8
891,999 - IAI46_04135 0.71 -1.2
892,016 + IAI46_04135 0.73 -0.2
892,167 + -0.9
892,168 - +1.1
892,171 + -0.0
892,172 - +0.1
892,172 - +0.3
892,184 + -0.5
892,185 - +0.5
892,213 - -0.3
892,213 - +0.2
892,213 - -0.8
892,258 - +0.3
892,258 - -0.0
892,260 + +0.2
892,280 + +0.2
892,280 + +0.4
892,281 - -0.3
892,281 - -0.5
892,281 - +0.3
892,281 - +0.7
892,285 + -0.3
892,335 + -1.1
892,335 + +0.6
892,336 - -0.6
892,336 - +0.3
892,336 - -0.4
892,338 + IAI46_04140 0.10 +0.3
892,338 + IAI46_04140 0.10 +0.2
892,338 + IAI46_04140 0.10 -0.0
892,339 - IAI46_04140 0.10 +0.1
892,339 - IAI46_04140 0.10 -0.7
892,339 - IAI46_04140 0.10 +0.4

Or see this region's nucleotide sequence