Strain Fitness in Serratia liquefaciens MT49 around IAI46_03595

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03590 and IAI46_03595 are separated by 68 nucleotidesIAI46_03595 and IAI46_03600 are separated by 9 nucleotides IAI46_03590: IAI46_03590 - two-component sensor histidine kinase BarA, at 776,572 to 779,304 _03590 IAI46_03595: IAI46_03595 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 779,373 to 780,722 _03595 IAI46_03600: IAI46_03600 - GTP diphosphokinase, at 780,732 to 782,963 _03600 Position (kb) 779 780 781Strain fitness (log2 ratio) -2 -1 0 1 2at 778.392 kb on + strand, within IAI46_03590at 778.605 kb on + strand, within IAI46_03590at 778.606 kb on - strand, within IAI46_03590at 778.624 kb on - strand, within IAI46_03590at 778.624 kb on - strand, within IAI46_03590at 778.675 kb on - strand, within IAI46_03590at 778.683 kb on + strand, within IAI46_03590at 778.684 kb on - strand, within IAI46_03590at 778.740 kb on + strand, within IAI46_03590at 778.741 kb on - strand, within IAI46_03590at 778.787 kb on + strand, within IAI46_03590at 778.788 kb on - strand, within IAI46_03590at 778.788 kb on - strand, within IAI46_03590at 778.832 kb on + strand, within IAI46_03590at 778.833 kb on - strand, within IAI46_03590at 778.833 kb on - strand, within IAI46_03590at 779.003 kb on + strand, within IAI46_03590at 779.026 kb on - strand, within IAI46_03590at 779.041 kb on + strandat 779.042 kb on - strandat 779.061 kb on + strandat 779.062 kb on - strandat 779.062 kb on - strandat 779.080 kb on + strandat 779.080 kb on + strandat 779.132 kb on + strandat 779.199 kb on - strandat 779.205 kb on - strandat 779.205 kb on - strandat 779.205 kb on - strandat 779.215 kb on + strandat 779.215 kb on + strandat 779.216 kb on - strandat 779.294 kb on + strandat 779.294 kb on + strandat 779.295 kb on - strandat 779.341 kb on - strandat 779.346 kb on - strandat 779.346 kb on - strandat 779.373 kb on - strandat 779.432 kb on - strandat 779.432 kb on - strandat 779.512 kb on + strand, within IAI46_03595at 779.772 kb on + strand, within IAI46_03595at 780.091 kb on - strand, within IAI46_03595at 780.111 kb on - strand, within IAI46_03595at 780.141 kb on + strand, within IAI46_03595at 780.141 kb on + strand, within IAI46_03595at 780.141 kb on + strand, within IAI46_03595at 780.141 kb on + strand, within IAI46_03595at 780.142 kb on - strand, within IAI46_03595at 780.142 kb on - strand, within IAI46_03595at 780.145 kb on - strand, within IAI46_03595at 780.161 kb on - strand, within IAI46_03595at 780.161 kb on - strand, within IAI46_03595at 780.166 kb on + strand, within IAI46_03595at 780.166 kb on + strand, within IAI46_03595at 780.167 kb on - strand, within IAI46_03595at 780.167 kb on - strand, within IAI46_03595at 780.196 kb on + strand, within IAI46_03595at 780.196 kb on + strand, within IAI46_03595at 780.208 kb on + strand, within IAI46_03595at 780.208 kb on + strand, within IAI46_03595at 780.209 kb on - strand, within IAI46_03595at 780.209 kb on - strand, within IAI46_03595at 780.209 kb on - strand, within IAI46_03595at 780.248 kb on + strand, within IAI46_03595at 780.248 kb on + strand, within IAI46_03595at 780.249 kb on - strand, within IAI46_03595at 780.340 kb on + strand, within IAI46_03595at 780.340 kb on + strand, within IAI46_03595at 780.340 kb on + strand, within IAI46_03595at 780.340 kb on + strand, within IAI46_03595at 780.341 kb on - strand, within IAI46_03595at 780.341 kb on - strand, within IAI46_03595at 780.341 kb on - strand, within IAI46_03595at 780.341 kb on - strand, within IAI46_03595at 780.341 kb on - strand, within IAI46_03595at 780.341 kb on - strand, within IAI46_03595at 780.362 kb on - strand, within IAI46_03595at 780.362 kb on - strand, within IAI46_03595at 780.376 kb on - strand, within IAI46_03595at 780.377 kb on + strand, within IAI46_03595at 780.377 kb on + strand, within IAI46_03595at 780.378 kb on - strand, within IAI46_03595at 780.386 kb on + strand, within IAI46_03595at 780.387 kb on - strand, within IAI46_03595at 780.390 kb on - strand, within IAI46_03595at 780.393 kb on - strand, within IAI46_03595at 780.524 kb on + strand, within IAI46_03595at 780.525 kb on - strand, within IAI46_03595at 780.531 kb on - strand, within IAI46_03595at 780.555 kb on + strand, within IAI46_03595at 780.555 kb on + strand, within IAI46_03595at 780.555 kb on + strand, within IAI46_03595at 780.556 kb on - strand, within IAI46_03595at 780.556 kb on - strand, within IAI46_03595at 780.556 kb on - strand, within IAI46_03595at 780.644 kb on + strandat 780.644 kb on + strandat 780.721 kb on - strandat 780.721 kb on - strandat 780.813 kb on - strandat 780.881 kb on + strandat 780.881 kb on + strandat 780.932 kb on + strandat 781.044 kb on + strand, within IAI46_03600at 781.044 kb on + strand, within IAI46_03600at 781.044 kb on + strand, within IAI46_03600at 781.045 kb on - strand, within IAI46_03600at 781.045 kb on - strand, within IAI46_03600at 781.067 kb on + strand, within IAI46_03600at 781.271 kb on + strand, within IAI46_03600at 781.275 kb on + strand, within IAI46_03600at 781.275 kb on + strand, within IAI46_03600at 781.275 kb on + strand, within IAI46_03600at 781.276 kb on - strand, within IAI46_03600at 781.276 kb on - strand, within IAI46_03600at 781.276 kb on - strand, within IAI46_03600at 781.362 kb on + strand, within IAI46_03600at 781.363 kb on - strand, within IAI46_03600at 781.363 kb on - strand, within IAI46_03600at 781.363 kb on - strand, within IAI46_03600at 781.443 kb on - strand, within IAI46_03600at 781.479 kb on + strand, within IAI46_03600at 781.479 kb on + strand, within IAI46_03600at 781.479 kb on + strand, within IAI46_03600at 781.479 kb on + strand, within IAI46_03600at 781.479 kb on + strand, within IAI46_03600at 781.480 kb on - strand, within IAI46_03600at 781.480 kb on - strand, within IAI46_03600at 781.500 kb on + strand, within IAI46_03600at 781.500 kb on + strand, within IAI46_03600at 781.501 kb on - strand, within IAI46_03600at 781.501 kb on - strand, within IAI46_03600at 781.600 kb on - strand, within IAI46_03600at 781.622 kb on + strand, within IAI46_03600at 781.660 kb on - strand, within IAI46_03600at 781.660 kb on - strand, within IAI46_03600at 781.660 kb on - strand, within IAI46_03600at 781.705 kb on + strand, within IAI46_03600at 781.705 kb on + strand, within IAI46_03600at 781.705 kb on + strand, within IAI46_03600at 781.705 kb on + strand, within IAI46_03600at 781.705 kb on + strand, within IAI46_03600at 781.706 kb on - strand, within IAI46_03600at 781.708 kb on + strand, within IAI46_03600at 781.708 kb on + strand, within IAI46_03600

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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778,392 + IAI46_03590 0.67 -0.4
778,605 + IAI46_03590 0.74 +0.1
778,606 - IAI46_03590 0.74 -0.0
778,624 - IAI46_03590 0.75 -0.3
778,624 - IAI46_03590 0.75 +0.0
778,675 - IAI46_03590 0.77 +0.1
778,683 + IAI46_03590 0.77 -0.2
778,684 - IAI46_03590 0.77 -0.2
778,740 + IAI46_03590 0.79 +0.3
778,741 - IAI46_03590 0.79 -0.2
778,787 + IAI46_03590 0.81 -0.2
778,788 - IAI46_03590 0.81 +0.0
778,788 - IAI46_03590 0.81 +0.1
778,832 + IAI46_03590 0.83 +0.3
778,833 - IAI46_03590 0.83 +0.3
778,833 - IAI46_03590 0.83 -0.3
779,003 + IAI46_03590 0.89 -0.7
779,026 - IAI46_03590 0.90 +0.2
779,041 + -0.1
779,042 - +0.5
779,061 + -0.1
779,062 - +0.4
779,062 - +0.2
779,080 + -0.2
779,080 + -0.7
779,132 + +0.7
779,199 - +0.2
779,205 - -0.2
779,205 - -1.1
779,205 - -0.4
779,215 + -0.5
779,215 + -0.2
779,216 - +0.6
779,294 + -0.5
779,294 + +0.2
779,295 - -0.3
779,341 - -0.2
779,346 - -1.8
779,346 - -0.2
779,373 - -0.1
779,432 - +0.1
779,432 - -0.2
779,512 + IAI46_03595 0.10 +0.0
779,772 + IAI46_03595 0.30 +0.4
780,091 - IAI46_03595 0.53 -0.5
780,111 - IAI46_03595 0.55 +1.4
780,141 + IAI46_03595 0.57 -0.2
780,141 + IAI46_03595 0.57 +0.3
780,141 + IAI46_03595 0.57 +0.4
780,141 + IAI46_03595 0.57 +0.2
780,142 - IAI46_03595 0.57 +0.3
780,142 - IAI46_03595 0.57 +0.8
780,145 - IAI46_03595 0.57 +0.0
780,161 - IAI46_03595 0.58 +0.2
780,161 - IAI46_03595 0.58 +0.1
780,166 + IAI46_03595 0.59 +0.4
780,166 + IAI46_03595 0.59 -0.5
780,167 - IAI46_03595 0.59 +0.2
780,167 - IAI46_03595 0.59 +0.7
780,196 + IAI46_03595 0.61 +0.7
780,196 + IAI46_03595 0.61 +0.4
780,208 + IAI46_03595 0.62 +1.7
780,208 + IAI46_03595 0.62 -0.0
780,209 - IAI46_03595 0.62 +1.6
780,209 - IAI46_03595 0.62 -0.4
780,209 - IAI46_03595 0.62 -0.1
780,248 + IAI46_03595 0.65 +0.7
780,248 + IAI46_03595 0.65 -0.4
780,249 - IAI46_03595 0.65 -0.0
780,340 + IAI46_03595 0.72 +0.0
780,340 + IAI46_03595 0.72 +0.9
780,340 + IAI46_03595 0.72 +0.6
780,340 + IAI46_03595 0.72 -0.7
780,341 - IAI46_03595 0.72 +1.8
780,341 - IAI46_03595 0.72 +0.0
780,341 - IAI46_03595 0.72 -0.3
780,341 - IAI46_03595 0.72 +0.1
780,341 - IAI46_03595 0.72 -0.4
780,341 - IAI46_03595 0.72 -0.3
780,362 - IAI46_03595 0.73 +0.6
780,362 - IAI46_03595 0.73 -0.6
780,376 - IAI46_03595 0.74 -0.4
780,377 + IAI46_03595 0.74 -0.1
780,377 + IAI46_03595 0.74 +0.2
780,378 - IAI46_03595 0.74 +0.4
780,386 + IAI46_03595 0.75 +0.1
780,387 - IAI46_03595 0.75 -0.2
780,390 - IAI46_03595 0.75 -0.2
780,393 - IAI46_03595 0.76 +0.0
780,524 + IAI46_03595 0.85 +0.0
780,525 - IAI46_03595 0.85 +0.0
780,531 - IAI46_03595 0.86 -0.1
780,555 + IAI46_03595 0.88 -0.7
780,555 + IAI46_03595 0.88 -0.4
780,555 + IAI46_03595 0.88 -0.3
780,556 - IAI46_03595 0.88 +0.6
780,556 - IAI46_03595 0.88 -0.8
780,556 - IAI46_03595 0.88 +0.4
780,644 + -1.0
780,644 + -0.3
780,721 - +0.6
780,721 - +0.7
780,813 - +0.5
780,881 + -1.0
780,881 + +0.4
780,932 + +0.5
781,044 + IAI46_03600 0.14 +0.0
781,044 + IAI46_03600 0.14 +1.6
781,044 + IAI46_03600 0.14 +0.4
781,045 - IAI46_03600 0.14 +1.2
781,045 - IAI46_03600 0.14 +0.3
781,067 + IAI46_03600 0.15 +0.4
781,271 + IAI46_03600 0.24 +0.4
781,275 + IAI46_03600 0.24 +0.5
781,275 + IAI46_03600 0.24 +0.9
781,275 + IAI46_03600 0.24 -0.1
781,276 - IAI46_03600 0.24 +0.4
781,276 - IAI46_03600 0.24 +1.0
781,276 - IAI46_03600 0.24 +1.3
781,362 + IAI46_03600 0.28 +0.6
781,363 - IAI46_03600 0.28 +0.0
781,363 - IAI46_03600 0.28 -0.9
781,363 - IAI46_03600 0.28 +0.6
781,443 - IAI46_03600 0.32 +1.2
781,479 + IAI46_03600 0.33 +0.5
781,479 + IAI46_03600 0.33 -0.1
781,479 + IAI46_03600 0.33 +0.6
781,479 + IAI46_03600 0.33 -0.1
781,479 + IAI46_03600 0.33 +0.3
781,480 - IAI46_03600 0.34 +0.0
781,480 - IAI46_03600 0.34 +1.3
781,500 + IAI46_03600 0.34 +1.1
781,500 + IAI46_03600 0.34 +0.0
781,501 - IAI46_03600 0.34 -0.1
781,501 - IAI46_03600 0.34 +0.3
781,600 - IAI46_03600 0.39 +0.8
781,622 + IAI46_03600 0.40 +1.0
781,660 - IAI46_03600 0.42 +0.5
781,660 - IAI46_03600 0.42 -0.1
781,660 - IAI46_03600 0.42 +0.5
781,705 + IAI46_03600 0.44 +0.1
781,705 + IAI46_03600 0.44 +0.6
781,705 + IAI46_03600 0.44 -0.1
781,705 + IAI46_03600 0.44 +0.2
781,705 + IAI46_03600 0.44 -0.1
781,706 - IAI46_03600 0.44 +0.4
781,708 + IAI46_03600 0.44 +0.3
781,708 + IAI46_03600 0.44 +0.6

Or see this region's nucleotide sequence