Strain Fitness in Serratia liquefaciens MT49 around IAI46_02620

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02615 and IAI46_02620 are separated by 143 nucleotidesIAI46_02620 and IAI46_02625 overlap by 8 nucleotides IAI46_02615: IAI46_02615 - TonB-dependent receptor, at 562,480 to 564,720 _02615 IAI46_02620: IAI46_02620 - MotA/TolQ/ExbB proton channel family protein, at 564,864 to 565,514 _02620 IAI46_02625: IAI46_02625 - phospholipase, at 565,507 to 566,757 _02625 Position (kb) 564 565 566Strain fitness (log2 ratio) -2 -1 0 1 2 3at 563.893 kb on + strand, within IAI46_02615at 563.893 kb on + strand, within IAI46_02615at 563.894 kb on - strand, within IAI46_02615at 563.894 kb on - strand, within IAI46_02615at 563.894 kb on - strand, within IAI46_02615at 563.894 kb on - strand, within IAI46_02615at 563.896 kb on - strand, within IAI46_02615at 563.896 kb on - strand, within IAI46_02615at 563.923 kb on + strand, within IAI46_02615at 563.923 kb on + strand, within IAI46_02615at 563.924 kb on - strand, within IAI46_02615at 563.924 kb on - strand, within IAI46_02615at 563.956 kb on + strand, within IAI46_02615at 563.956 kb on + strand, within IAI46_02615at 563.986 kb on + strand, within IAI46_02615at 563.987 kb on - strand, within IAI46_02615at 563.987 kb on - strand, within IAI46_02615at 563.987 kb on - strand, within IAI46_02615at 563.987 kb on - strand, within IAI46_02615at 563.987 kb on - strand, within IAI46_02615at 564.022 kb on + strand, within IAI46_02615at 564.022 kb on + strand, within IAI46_02615at 564.023 kb on - strand, within IAI46_02615at 564.031 kb on + strand, within IAI46_02615at 564.052 kb on - strand, within IAI46_02615at 564.052 kb on - strand, within IAI46_02615at 564.112 kb on - strand, within IAI46_02615at 564.112 kb on - strand, within IAI46_02615at 564.136 kb on + strand, within IAI46_02615at 564.137 kb on - strand, within IAI46_02615at 564.145 kb on + strand, within IAI46_02615at 564.187 kb on + strand, within IAI46_02615at 564.201 kb on + strand, within IAI46_02615at 564.268 kb on + strand, within IAI46_02615at 564.268 kb on + strand, within IAI46_02615at 564.269 kb on - strand, within IAI46_02615at 564.271 kb on + strand, within IAI46_02615at 564.271 kb on + strand, within IAI46_02615at 564.271 kb on + strand, within IAI46_02615at 564.272 kb on - strand, within IAI46_02615at 564.272 kb on - strand, within IAI46_02615at 564.280 kb on + strand, within IAI46_02615at 564.280 kb on + strand, within IAI46_02615at 564.281 kb on - strand, within IAI46_02615at 564.281 kb on - strand, within IAI46_02615at 564.281 kb on - strand, within IAI46_02615at 564.281 kb on - strand, within IAI46_02615at 564.286 kb on + strand, within IAI46_02615at 564.286 kb on + strand, within IAI46_02615at 564.286 kb on + strand, within IAI46_02615at 564.286 kb on + strand, within IAI46_02615at 564.287 kb on - strand, within IAI46_02615at 564.287 kb on - strand, within IAI46_02615at 564.287 kb on - strand, within IAI46_02615at 564.287 kb on - strand, within IAI46_02615at 564.287 kb on - strand, within IAI46_02615at 564.287 kb on - strand, within IAI46_02615at 564.287 kb on - strand, within IAI46_02615at 564.287 kb on - strand, within IAI46_02615at 564.384 kb on + strand, within IAI46_02615at 564.415 kb on + strand, within IAI46_02615at 564.415 kb on + strand, within IAI46_02615at 564.419 kb on - strand, within IAI46_02615at 564.419 kb on - strand, within IAI46_02615at 564.440 kb on - strand, within IAI46_02615at 564.440 kb on - strand, within IAI46_02615at 564.455 kb on - strand, within IAI46_02615at 564.595 kb on + strandat 564.595 kb on + strandat 564.637 kb on + strandat 564.637 kb on + strandat 564.637 kb on + strandat 564.638 kb on - strandat 564.638 kb on - strandat 564.640 kb on - strandat 564.647 kb on + strandat 564.664 kb on + strandat 564.665 kb on - strandat 564.667 kb on + strandat 564.667 kb on + strandat 564.667 kb on + strandat 564.667 kb on + strandat 564.667 kb on + strandat 564.667 kb on + strandat 564.668 kb on - strandat 564.668 kb on - strandat 564.688 kb on - strandat 564.698 kb on + strandat 564.718 kb on + strandat 564.722 kb on + strandat 564.723 kb on - strandat 564.723 kb on - strandat 564.723 kb on - strandat 564.723 kb on - strandat 564.726 kb on + strandat 564.726 kb on + strandat 564.726 kb on + strandat 564.726 kb on + strandat 564.727 kb on - strandat 564.727 kb on - strandat 564.727 kb on - strandat 564.727 kb on - strandat 564.727 kb on - strandat 564.727 kb on - strandat 564.727 kb on - strandat 564.728 kb on + strandat 564.733 kb on + strandat 564.733 kb on + strandat 564.734 kb on - strandat 564.784 kb on + strandat 564.784 kb on + strandat 564.784 kb on + strandat 564.784 kb on + strandat 564.784 kb on + strandat 564.785 kb on - strandat 564.785 kb on - strandat 564.788 kb on + strandat 564.788 kb on + strandat 564.788 kb on + strandat 564.788 kb on + strandat 564.788 kb on + strandat 564.788 kb on + strandat 564.789 kb on - strandat 564.792 kb on + strandat 564.792 kb on + strandat 564.792 kb on + strandat 564.792 kb on + strandat 564.792 kb on + strandat 564.793 kb on - strandat 564.796 kb on + strandat 564.796 kb on + strandat 564.797 kb on - strandat 564.797 kb on - strandat 564.849 kb on + strandat 564.850 kb on - strandat 564.890 kb on + strandat 564.891 kb on - strandat 564.898 kb on - strandat 564.906 kb on + strandat 564.906 kb on + strandat 564.907 kb on - strandat 564.939 kb on - strand, within IAI46_02620at 564.947 kb on + strand, within IAI46_02620at 564.947 kb on + strand, within IAI46_02620at 564.947 kb on + strand, within IAI46_02620at 564.954 kb on + strand, within IAI46_02620at 564.963 kb on + strand, within IAI46_02620at 564.964 kb on - strand, within IAI46_02620at 564.964 kb on - strand, within IAI46_02620at 564.965 kb on + strand, within IAI46_02620at 564.966 kb on - strand, within IAI46_02620at 565.146 kb on + strand, within IAI46_02620at 565.146 kb on + strand, within IAI46_02620at 565.196 kb on + strand, within IAI46_02620at 565.196 kb on + strand, within IAI46_02620at 565.196 kb on + strand, within IAI46_02620at 565.233 kb on - strand, within IAI46_02620at 565.326 kb on + strand, within IAI46_02620at 565.327 kb on - strand, within IAI46_02620at 565.343 kb on + strand, within IAI46_02620at 565.407 kb on - strand, within IAI46_02620at 565.512 kb on + strandat 565.513 kb on - strandat 565.539 kb on - strandat 565.539 kb on - strandat 565.549 kb on + strandat 565.634 kb on - strand, within IAI46_02625at 565.634 kb on - strand, within IAI46_02625at 565.634 kb on - strand, within IAI46_02625at 565.634 kb on - strand, within IAI46_02625at 565.744 kb on + strand, within IAI46_02625at 565.744 kb on + strand, within IAI46_02625at 565.744 kb on + strand, within IAI46_02625at 565.860 kb on + strand, within IAI46_02625at 565.860 kb on + strand, within IAI46_02625at 565.861 kb on - strand, within IAI46_02625at 565.861 kb on - strand, within IAI46_02625at 565.884 kb on + strand, within IAI46_02625at 565.911 kb on + strand, within IAI46_02625at 565.912 kb on - strand, within IAI46_02625at 565.912 kb on - strand, within IAI46_02625at 565.912 kb on - strand, within IAI46_02625at 565.921 kb on + strand, within IAI46_02625at 565.957 kb on + strand, within IAI46_02625at 566.162 kb on + strand, within IAI46_02625at 566.162 kb on + strand, within IAI46_02625at 566.162 kb on + strand, within IAI46_02625at 566.182 kb on + strand, within IAI46_02625at 566.182 kb on + strand, within IAI46_02625at 566.207 kb on - strand, within IAI46_02625at 566.282 kb on + strand, within IAI46_02625at 566.282 kb on + strand, within IAI46_02625at 566.297 kb on - strand, within IAI46_02625at 566.336 kb on - strand, within IAI46_02625at 566.338 kb on + strand, within IAI46_02625at 566.339 kb on - strand, within IAI46_02625at 566.339 kb on - strand, within IAI46_02625at 566.415 kb on + strand, within IAI46_02625

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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563,893 + IAI46_02615 0.63 -0.7
563,893 + IAI46_02615 0.63 -0.0
563,894 - IAI46_02615 0.63 -0.6
563,894 - IAI46_02615 0.63 -0.2
563,894 - IAI46_02615 0.63 +0.5
563,894 - IAI46_02615 0.63 +0.6
563,896 - IAI46_02615 0.63 -2.3
563,896 - IAI46_02615 0.63 -0.1
563,923 + IAI46_02615 0.64 +0.5
563,923 + IAI46_02615 0.64 -0.2
563,924 - IAI46_02615 0.64 +0.1
563,924 - IAI46_02615 0.64 +0.5
563,956 + IAI46_02615 0.66 +0.2
563,956 + IAI46_02615 0.66 -0.2
563,986 + IAI46_02615 0.67 +0.1
563,987 - IAI46_02615 0.67 -0.3
563,987 - IAI46_02615 0.67 +0.1
563,987 - IAI46_02615 0.67 -0.1
563,987 - IAI46_02615 0.67 -1.4
563,987 - IAI46_02615 0.67 -0.2
564,022 + IAI46_02615 0.69 +0.2
564,022 + IAI46_02615 0.69 +0.6
564,023 - IAI46_02615 0.69 +0.4
564,031 + IAI46_02615 0.69 +0.8
564,052 - IAI46_02615 0.70 +1.7
564,052 - IAI46_02615 0.70 -0.1
564,112 - IAI46_02615 0.73 -0.5
564,112 - IAI46_02615 0.73 -0.8
564,136 + IAI46_02615 0.74 -0.2
564,137 - IAI46_02615 0.74 -0.2
564,145 + IAI46_02615 0.74 -0.4
564,187 + IAI46_02615 0.76 -0.0
564,201 + IAI46_02615 0.77 +0.4
564,268 + IAI46_02615 0.80 +0.6
564,268 + IAI46_02615 0.80 -0.7
564,269 - IAI46_02615 0.80 +2.9
564,271 + IAI46_02615 0.80 +0.3
564,271 + IAI46_02615 0.80 +0.3
564,271 + IAI46_02615 0.80 -0.6
564,272 - IAI46_02615 0.80 -0.8
564,272 - IAI46_02615 0.80 +0.1
564,280 + IAI46_02615 0.80 -0.3
564,280 + IAI46_02615 0.80 -0.2
564,281 - IAI46_02615 0.80 +0.6
564,281 - IAI46_02615 0.80 +0.2
564,281 - IAI46_02615 0.80 -0.1
564,281 - IAI46_02615 0.80 -1.1
564,286 + IAI46_02615 0.81 -0.3
564,286 + IAI46_02615 0.81 +0.1
564,286 + IAI46_02615 0.81 -0.1
564,286 + IAI46_02615 0.81 -0.1
564,287 - IAI46_02615 0.81 -0.9
564,287 - IAI46_02615 0.81 +0.7
564,287 - IAI46_02615 0.81 -0.1
564,287 - IAI46_02615 0.81 +1.0
564,287 - IAI46_02615 0.81 +0.1
564,287 - IAI46_02615 0.81 -1.3
564,287 - IAI46_02615 0.81 -1.8
564,287 - IAI46_02615 0.81 +0.7
564,384 + IAI46_02615 0.85 +0.8
564,415 + IAI46_02615 0.86 -0.2
564,415 + IAI46_02615 0.86 -0.2
564,419 - IAI46_02615 0.87 +1.0
564,419 - IAI46_02615 0.87 +0.5
564,440 - IAI46_02615 0.87 -0.6
564,440 - IAI46_02615 0.87 +0.3
564,455 - IAI46_02615 0.88 -0.8
564,595 + +0.7
564,595 + +0.2
564,637 + +0.1
564,637 + +0.1
564,637 + +0.4
564,638 - -0.3
564,638 - -0.1
564,640 - +1.0
564,647 + -0.0
564,664 + +0.8
564,665 - +0.2
564,667 + +0.1
564,667 + -0.4
564,667 + +0.3
564,667 + +0.5
564,667 + +0.4
564,667 + -0.5
564,668 - -0.3
564,668 - +0.3
564,688 - +0.6
564,698 + +0.3
564,718 + -0.1
564,722 + +0.2
564,723 - -0.1
564,723 - -1.3
564,723 - +0.4
564,723 - -0.7
564,726 + -0.0
564,726 + -0.2
564,726 + -0.1
564,726 + +0.0
564,727 - -0.2
564,727 - -0.2
564,727 - -0.5
564,727 - +0.5
564,727 - +0.6
564,727 - +0.5
564,727 - -0.8
564,728 + -0.5
564,733 + +0.6
564,733 + +0.7
564,734 - -0.6
564,784 + -1.3
564,784 + +0.9
564,784 + -0.7
564,784 + +0.5
564,784 + +0.0
564,785 - +0.5
564,785 - +0.4
564,788 + +0.7
564,788 + +0.2
564,788 + -0.1
564,788 + +0.5
564,788 + +1.3
564,788 + +0.2
564,789 - -0.3
564,792 + +0.5
564,792 + -0.3
564,792 + -2.0
564,792 + +0.7
564,792 + +0.6
564,793 - -0.1
564,796 + -0.3
564,796 + +0.5
564,797 - +0.1
564,797 - -0.9
564,849 + -0.5
564,850 - -0.1
564,890 + +0.3
564,891 - -1.5
564,898 - -0.0
564,906 + -1.1
564,906 + -0.4
564,907 - -0.3
564,939 - IAI46_02620 0.12 +0.7
564,947 + IAI46_02620 0.13 -1.0
564,947 + IAI46_02620 0.13 -0.2
564,947 + IAI46_02620 0.13 +0.5
564,954 + IAI46_02620 0.14 +0.7
564,963 + IAI46_02620 0.15 -0.9
564,964 - IAI46_02620 0.15 -0.3
564,964 - IAI46_02620 0.15 +1.0
564,965 + IAI46_02620 0.16 -0.2
564,966 - IAI46_02620 0.16 -1.8
565,146 + IAI46_02620 0.43 +0.7
565,146 + IAI46_02620 0.43 +0.3
565,196 + IAI46_02620 0.51 -0.1
565,196 + IAI46_02620 0.51 -1.5
565,196 + IAI46_02620 0.51 +0.4
565,233 - IAI46_02620 0.57 +0.4
565,326 + IAI46_02620 0.71 -0.2
565,327 - IAI46_02620 0.71 +0.5
565,343 + IAI46_02620 0.74 +0.9
565,407 - IAI46_02620 0.83 -0.4
565,512 + +0.1
565,513 - +1.0
565,539 - +1.1
565,539 - +0.6
565,549 + +0.5
565,634 - IAI46_02625 0.10 -2.4
565,634 - IAI46_02625 0.10 +0.3
565,634 - IAI46_02625 0.10 -0.2
565,634 - IAI46_02625 0.10 -0.1
565,744 + IAI46_02625 0.19 +0.0
565,744 + IAI46_02625 0.19 +0.1
565,744 + IAI46_02625 0.19 -1.1
565,860 + IAI46_02625 0.28 +0.1
565,860 + IAI46_02625 0.28 +0.7
565,861 - IAI46_02625 0.28 +1.0
565,861 - IAI46_02625 0.28 -0.7
565,884 + IAI46_02625 0.30 -0.2
565,911 + IAI46_02625 0.32 +0.9
565,912 - IAI46_02625 0.32 +0.2
565,912 - IAI46_02625 0.32 +0.4
565,912 - IAI46_02625 0.32 +0.1
565,921 + IAI46_02625 0.33 -0.3
565,957 + IAI46_02625 0.36 +0.2
566,162 + IAI46_02625 0.52 -0.3
566,162 + IAI46_02625 0.52 +0.4
566,162 + IAI46_02625 0.52 -0.5
566,182 + IAI46_02625 0.54 +0.1
566,182 + IAI46_02625 0.54 -0.5
566,207 - IAI46_02625 0.56 -0.1
566,282 + IAI46_02625 0.62 +0.0
566,282 + IAI46_02625 0.62 -0.7
566,297 - IAI46_02625 0.63 +0.1
566,336 - IAI46_02625 0.66 -0.5
566,338 + IAI46_02625 0.66 +0.2
566,339 - IAI46_02625 0.67 +1.1
566,339 - IAI46_02625 0.67 -0.2
566,415 + IAI46_02625 0.73 -0.2

Or see this region's nucleotide sequence