Strain Fitness in Serratia liquefaciens MT49 around IAI46_01960

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01955 and IAI46_01960 are separated by 128 nucleotidesIAI46_01960 and IAI46_01965 are separated by 116 nucleotidesIAI46_01965 and IAI46_01970 overlap by 11 nucleotides IAI46_01955: IAI46_01955 - polyribonucleotide nucleotidyltransferase, at 418,596 to 420,713 _01955 IAI46_01960: IAI46_01960 - lipoprotein NlpI, at 420,842 to 421,726 _01960 IAI46_01965: IAI46_01965 - protein YrbN, at 421,843 to 421,923 _01965 IAI46_01970: IAI46_01970 - DEAD/DEAH family ATP-dependent RNA helicase, at 421,913 to 423,880 _01970 Position (kb) 420 421 422Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 419.863 kb on - strand, within IAI46_01955at 419.863 kb on - strand, within IAI46_01955at 420.099 kb on - strand, within IAI46_01955at 420.101 kb on + strand, within IAI46_01955at 420.215 kb on + strand, within IAI46_01955at 420.236 kb on + strand, within IAI46_01955at 420.236 kb on + strand, within IAI46_01955at 420.236 kb on + strand, within IAI46_01955at 420.257 kb on + strand, within IAI46_01955at 420.257 kb on + strand, within IAI46_01955at 420.257 kb on + strand, within IAI46_01955at 420.305 kb on + strand, within IAI46_01955at 420.351 kb on - strand, within IAI46_01955at 420.351 kb on - strand, within IAI46_01955at 420.351 kb on - strand, within IAI46_01955at 420.351 kb on - strand, within IAI46_01955at 420.374 kb on + strand, within IAI46_01955at 420.374 kb on + strand, within IAI46_01955at 420.374 kb on + strand, within IAI46_01955at 420.375 kb on - strand, within IAI46_01955at 420.392 kb on + strand, within IAI46_01955at 420.392 kb on + strand, within IAI46_01955at 420.465 kb on - strand, within IAI46_01955at 420.469 kb on - strand, within IAI46_01955at 420.469 kb on - strand, within IAI46_01955at 420.469 kb on - strand, within IAI46_01955at 420.476 kb on + strand, within IAI46_01955at 420.483 kb on - strand, within IAI46_01955at 420.527 kb on + strandat 420.527 kb on + strandat 420.528 kb on - strandat 420.528 kb on - strandat 420.588 kb on + strandat 420.589 kb on - strandat 420.589 kb on - strandat 420.610 kb on + strandat 420.622 kb on + strandat 420.711 kb on + strandat 420.712 kb on - strandat 420.719 kb on + strandat 420.720 kb on - strandat 420.720 kb on - strandat 420.729 kb on + strandat 420.787 kb on + strandat 420.787 kb on + strandat 420.788 kb on - strandat 420.788 kb on - strandat 420.791 kb on - strandat 420.866 kb on + strandat 420.866 kb on + strandat 420.866 kb on + strandat 420.867 kb on - strandat 420.990 kb on + strand, within IAI46_01960at 420.991 kb on - strand, within IAI46_01960at 421.036 kb on - strand, within IAI46_01960at 421.036 kb on - strand, within IAI46_01960at 421.037 kb on + strand, within IAI46_01960at 421.055 kb on + strand, within IAI46_01960at 421.056 kb on - strand, within IAI46_01960at 421.123 kb on + strand, within IAI46_01960at 421.123 kb on + strand, within IAI46_01960at 421.123 kb on + strand, within IAI46_01960at 421.142 kb on + strand, within IAI46_01960at 421.142 kb on + strand, within IAI46_01960at 421.154 kb on + strand, within IAI46_01960at 421.154 kb on + strand, within IAI46_01960at 421.154 kb on + strand, within IAI46_01960at 421.154 kb on + strand, within IAI46_01960at 421.155 kb on - strand, within IAI46_01960at 421.155 kb on - strand, within IAI46_01960at 421.187 kb on + strand, within IAI46_01960at 421.188 kb on - strand, within IAI46_01960at 421.188 kb on - strand, within IAI46_01960at 421.209 kb on + strand, within IAI46_01960at 421.209 kb on + strand, within IAI46_01960at 421.210 kb on - strand, within IAI46_01960at 421.210 kb on - strand, within IAI46_01960at 421.227 kb on - strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.263 kb on - strand, within IAI46_01960at 421.265 kb on + strand, within IAI46_01960at 421.310 kb on + strand, within IAI46_01960at 421.311 kb on - strand, within IAI46_01960at 421.352 kb on + strand, within IAI46_01960at 421.392 kb on + strand, within IAI46_01960at 421.392 kb on + strand, within IAI46_01960at 421.444 kb on + strand, within IAI46_01960at 421.444 kb on + strand, within IAI46_01960at 421.444 kb on + strand, within IAI46_01960at 421.457 kb on + strand, within IAI46_01960at 421.556 kb on + strand, within IAI46_01960at 421.556 kb on + strand, within IAI46_01960at 421.557 kb on - strand, within IAI46_01960at 421.557 kb on - strand, within IAI46_01960at 421.560 kb on + strand, within IAI46_01960at 421.561 kb on - strand, within IAI46_01960at 421.564 kb on + strand, within IAI46_01960at 421.564 kb on + strand, within IAI46_01960at 421.565 kb on - strand, within IAI46_01960at 421.571 kb on + strand, within IAI46_01960at 421.571 kb on + strand, within IAI46_01960at 421.571 kb on + strand, within IAI46_01960at 421.571 kb on + strand, within IAI46_01960at 421.575 kb on + strand, within IAI46_01960at 421.575 kb on + strand, within IAI46_01960at 421.575 kb on + strand, within IAI46_01960at 421.576 kb on - strand, within IAI46_01960at 421.576 kb on - strand, within IAI46_01960at 421.639 kb on + strandat 421.639 kb on + strandat 421.658 kb on + strandat 421.683 kb on + strandat 421.724 kb on + strandat 421.725 kb on - strandat 421.740 kb on - strandat 421.752 kb on + strandat 421.753 kb on - strandat 421.810 kb on + strandat 421.878 kb on + strand, within IAI46_01965at 421.878 kb on + strand, within IAI46_01965at 421.878 kb on + strand, within IAI46_01965at 421.893 kb on + strand, within IAI46_01965

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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419,863 - IAI46_01955 0.60 -1.7
419,863 - IAI46_01955 0.60 -0.3
420,099 - IAI46_01955 0.71 +0.2
420,101 + IAI46_01955 0.71 +0.2
420,215 + IAI46_01955 0.76 +0.7
420,236 + IAI46_01955 0.77 -1.2
420,236 + IAI46_01955 0.77 -1.2
420,236 + IAI46_01955 0.77 -0.1
420,257 + IAI46_01955 0.78 -1.4
420,257 + IAI46_01955 0.78 -0.3
420,257 + IAI46_01955 0.78 -2.1
420,305 + IAI46_01955 0.81 -0.6
420,351 - IAI46_01955 0.83 +0.2
420,351 - IAI46_01955 0.83 -0.6
420,351 - IAI46_01955 0.83 -1.7
420,351 - IAI46_01955 0.83 -0.1
420,374 + IAI46_01955 0.84 -0.6
420,374 + IAI46_01955 0.84 -3.1
420,374 + IAI46_01955 0.84 +1.7
420,375 - IAI46_01955 0.84 +1.2
420,392 + IAI46_01955 0.85 -2.2
420,392 + IAI46_01955 0.85 +0.2
420,465 - IAI46_01955 0.88 +0.1
420,469 - IAI46_01955 0.88 -0.8
420,469 - IAI46_01955 0.88 -0.8
420,469 - IAI46_01955 0.88 +1.0
420,476 + IAI46_01955 0.89 +0.1
420,483 - IAI46_01955 0.89 +0.2
420,527 + -0.9
420,527 + +2.6
420,528 - -0.1
420,528 - -0.8
420,588 + +0.7
420,589 - -1.3
420,589 - -0.9
420,610 + +1.1
420,622 + +0.0
420,711 + +0.1
420,712 - -1.3
420,719 + -0.5
420,720 - +0.0
420,720 - -0.2
420,729 + -0.0
420,787 + -0.5
420,787 + -0.7
420,788 - -0.7
420,788 - -0.5
420,791 - -0.5
420,866 + -1.4
420,866 + -0.2
420,866 + -1.2
420,867 - -0.5
420,990 + IAI46_01960 0.17 -1.4
420,991 - IAI46_01960 0.17 -0.1
421,036 - IAI46_01960 0.22 +1.2
421,036 - IAI46_01960 0.22 +0.2
421,037 + IAI46_01960 0.22 +1.0
421,055 + IAI46_01960 0.24 -0.7
421,056 - IAI46_01960 0.24 -0.8
421,123 + IAI46_01960 0.32 -1.1
421,123 + IAI46_01960 0.32 +0.8
421,123 + IAI46_01960 0.32 +0.4
421,142 + IAI46_01960 0.34 -1.2
421,142 + IAI46_01960 0.34 -2.0
421,154 + IAI46_01960 0.35 -0.0
421,154 + IAI46_01960 0.35 -0.6
421,154 + IAI46_01960 0.35 -0.5
421,154 + IAI46_01960 0.35 +0.2
421,155 - IAI46_01960 0.35 +0.2
421,155 - IAI46_01960 0.35 +0.5
421,187 + IAI46_01960 0.39 -0.5
421,188 - IAI46_01960 0.39 +0.2
421,188 - IAI46_01960 0.39 -0.8
421,209 + IAI46_01960 0.41 -2.1
421,209 + IAI46_01960 0.41 -0.4
421,210 - IAI46_01960 0.42 -0.1
421,210 - IAI46_01960 0.42 +0.2
421,227 - IAI46_01960 0.44 +0.2
421,262 + IAI46_01960 0.47 -0.1
421,262 + IAI46_01960 0.47 +0.2
421,262 + IAI46_01960 0.47 +0.1
421,262 + IAI46_01960 0.47 -0.4
421,262 + IAI46_01960 0.47 +1.8
421,263 - IAI46_01960 0.48 -0.8
421,265 + IAI46_01960 0.48 +1.0
421,310 + IAI46_01960 0.53 +0.7
421,311 - IAI46_01960 0.53 -1.5
421,352 + IAI46_01960 0.58 -0.9
421,392 + IAI46_01960 0.62 -0.8
421,392 + IAI46_01960 0.62 -0.6
421,444 + IAI46_01960 0.68 -1.3
421,444 + IAI46_01960 0.68 +0.7
421,444 + IAI46_01960 0.68 +0.2
421,457 + IAI46_01960 0.69 -0.8
421,556 + IAI46_01960 0.81 -0.3
421,556 + IAI46_01960 0.81 +0.4
421,557 - IAI46_01960 0.81 -0.1
421,557 - IAI46_01960 0.81 -0.1
421,560 + IAI46_01960 0.81 -0.4
421,561 - IAI46_01960 0.81 +0.2
421,564 + IAI46_01960 0.82 -0.1
421,564 + IAI46_01960 0.82 -0.1
421,565 - IAI46_01960 0.82 +0.2
421,571 + IAI46_01960 0.82 -0.3
421,571 + IAI46_01960 0.82 +0.4
421,571 + IAI46_01960 0.82 +0.8
421,571 + IAI46_01960 0.82 +0.1
421,575 + IAI46_01960 0.83 -1.7
421,575 + IAI46_01960 0.83 +1.0
421,575 + IAI46_01960 0.83 -0.4
421,576 - IAI46_01960 0.83 +0.7
421,576 - IAI46_01960 0.83 -0.5
421,639 + +0.1
421,639 + -0.1
421,658 + -1.9
421,683 + +1.0
421,724 + -0.1
421,725 - +1.5
421,740 - +0.4
421,752 + -0.4
421,753 - -0.1
421,810 + +1.1
421,878 + IAI46_01965 0.43 -0.1
421,878 + IAI46_01965 0.43 -0.8
421,878 + IAI46_01965 0.43 +0.4
421,893 + IAI46_01965 0.62 -0.3

Or see this region's nucleotide sequence