Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_01865 and IAI46_01870 overlap by 4 nucleotides IAI46_01870 and IAI46_01875 are separated by 8 nucleotides IAI46_01875 and IAI46_01880 are separated by 256 nucleotides IAI46_01880 and IAI46_01885 are separated by 114 nucleotides
IAI46_01865: IAI46_01865 - two-component system sensor histidine kinase PmrB, at 401,384 to 402,448
_01865
IAI46_01870: IAI46_01870 - two-component system response regulator PmrA, at 402,445 to 403,107
_01870
IAI46_01875: IAI46_01875 - serine-type D-Ala-D-Ala carboxypeptidase, at 403,116 to 404,549
_01875
IAI46_01880: IAI46_01880 - transcription elongation factor GreA, at 404,806 to 405,282
_01880
IAI46_01885: IAI46_01885 - ribosome assembly RNA-binding protein YhbY, at 405,397 to 405,690
_01885
Position (kb) 403
404
405 Strain fitness (log2 ratio) -2
-1
0
1
2 at 402.193 kb on + strand, within IAI46_01865 at 402.194 kb on - strand, within IAI46_01865 at 402.468 kb on - strand at 402.523 kb on - strand, within IAI46_01870 at 402.523 kb on - strand, within IAI46_01870 at 402.528 kb on + strand, within IAI46_01870 at 402.554 kb on - strand, within IAI46_01870 at 402.554 kb on - strand, within IAI46_01870 at 402.570 kb on + strand, within IAI46_01870 at 402.572 kb on + strand, within IAI46_01870 at 402.572 kb on + strand, within IAI46_01870 at 402.573 kb on - strand, within IAI46_01870 at 402.683 kb on + strand, within IAI46_01870 at 402.683 kb on + strand, within IAI46_01870 at 402.683 kb on + strand, within IAI46_01870 at 402.683 kb on + strand, within IAI46_01870 at 402.684 kb on - strand, within IAI46_01870 at 402.729 kb on + strand, within IAI46_01870 at 402.729 kb on + strand, within IAI46_01870 at 402.730 kb on - strand, within IAI46_01870 at 402.753 kb on - strand, within IAI46_01870 at 402.785 kb on - strand, within IAI46_01870 at 402.785 kb on - strand, within IAI46_01870 at 402.793 kb on + strand, within IAI46_01870 at 402.815 kb on + strand, within IAI46_01870 at 402.963 kb on + strand, within IAI46_01870 at 402.974 kb on + strand, within IAI46_01870 at 402.975 kb on - strand, within IAI46_01870 at 402.975 kb on - strand, within IAI46_01870 at 402.975 kb on - strand, within IAI46_01870 at 403.034 kb on + strand, within IAI46_01870 at 403.034 kb on + strand, within IAI46_01870 at 403.034 kb on + strand, within IAI46_01870 at 403.035 kb on - strand, within IAI46_01870 at 403.111 kb on - strand at 403.111 kb on - strand at 403.208 kb on - strand at 403.208 kb on - strand at 403.215 kb on + strand at 403.215 kb on + strand at 403.215 kb on + strand at 403.216 kb on - strand at 403.219 kb on + strand at 403.219 kb on + strand at 403.219 kb on + strand at 403.219 kb on + strand at 403.219 kb on + strand at 403.219 kb on + strand at 403.219 kb on + strand at 403.219 kb on + strand at 403.219 kb on + strand at 403.219 kb on + strand at 403.219 kb on + strand at 403.219 kb on + strand at 403.220 kb on - strand at 403.220 kb on - strand at 403.220 kb on - strand at 403.224 kb on + strand at 403.224 kb on + strand at 403.224 kb on + strand at 403.225 kb on - strand at 403.225 kb on - strand at 403.225 kb on - strand at 403.225 kb on - strand at 403.225 kb on - strand at 403.225 kb on - strand at 403.256 kb on + strand at 403.256 kb on + strand at 403.257 kb on - strand at 403.257 kb on - strand at 403.260 kb on - strand, within IAI46_01875 at 403.274 kb on + strand, within IAI46_01875 at 403.275 kb on - strand, within IAI46_01875 at 403.275 kb on - strand, within IAI46_01875 at 403.276 kb on + strand, within IAI46_01875 at 403.276 kb on + strand, within IAI46_01875 at 403.276 kb on + strand, within IAI46_01875 at 403.276 kb on + strand, within IAI46_01875 at 403.276 kb on + strand, within IAI46_01875 at 403.276 kb on + strand, within IAI46_01875 at 403.276 kb on + strand, within IAI46_01875 at 403.276 kb on + strand, within IAI46_01875 at 403.277 kb on - strand, within IAI46_01875 at 403.277 kb on - strand, within IAI46_01875 at 403.277 kb on - strand, within IAI46_01875 at 403.277 kb on - strand, within IAI46_01875 at 403.277 kb on - strand, within IAI46_01875 at 403.277 kb on - strand, within IAI46_01875 at 403.277 kb on - strand, within IAI46_01875 at 403.277 kb on - strand, within IAI46_01875 at 403.277 kb on - strand, within IAI46_01875 at 403.277 kb on - strand, within IAI46_01875 at 403.278 kb on + strand, within IAI46_01875 at 403.278 kb on + strand, within IAI46_01875 at 403.278 kb on + strand, within IAI46_01875 at 403.278 kb on + strand, within IAI46_01875 at 403.279 kb on - strand, within IAI46_01875 at 403.279 kb on - strand, within IAI46_01875 at 403.279 kb on - strand, within IAI46_01875 at 403.279 kb on - strand, within IAI46_01875 at 403.279 kb on - strand, within IAI46_01875 at 403.423 kb on + strand, within IAI46_01875 at 403.423 kb on + strand, within IAI46_01875 at 403.423 kb on + strand, within IAI46_01875 at 403.463 kb on + strand, within IAI46_01875 at 403.489 kb on - strand, within IAI46_01875 at 403.569 kb on - strand, within IAI46_01875 at 403.647 kb on - strand, within IAI46_01875 at 403.789 kb on + strand, within IAI46_01875 at 403.790 kb on - strand, within IAI46_01875 at 403.790 kb on - strand, within IAI46_01875 at 403.790 kb on - strand, within IAI46_01875 at 403.863 kb on - strand, within IAI46_01875 at 403.904 kb on - strand, within IAI46_01875 at 403.946 kb on + strand, within IAI46_01875 at 403.947 kb on - strand, within IAI46_01875 at 403.947 kb on - strand, within IAI46_01875 at 403.952 kb on + strand, within IAI46_01875 at 403.953 kb on - strand, within IAI46_01875 at 403.953 kb on - strand, within IAI46_01875 at 403.953 kb on - strand, within IAI46_01875 at 403.953 kb on - strand, within IAI46_01875 at 403.953 kb on - strand, within IAI46_01875 at 403.967 kb on - strand, within IAI46_01875 at 403.967 kb on - strand, within IAI46_01875 at 403.967 kb on - strand, within IAI46_01875 at 403.982 kb on + strand, within IAI46_01875 at 404.135 kb on + strand, within IAI46_01875 at 404.277 kb on - strand, within IAI46_01875 at 404.311 kb on + strand, within IAI46_01875 at 404.311 kb on + strand, within IAI46_01875 at 404.312 kb on - strand, within IAI46_01875 at 404.312 kb on - strand, within IAI46_01875 at 404.340 kb on + strand, within IAI46_01875 at 404.341 kb on - strand, within IAI46_01875 at 404.364 kb on - strand, within IAI46_01875 at 404.433 kb on + strand at 404.433 kb on + strand at 404.434 kb on - strand at 404.465 kb on - strand at 404.465 kb on - strand at 404.473 kb on + strand at 404.474 kb on - strand at 404.550 kb on - strand at 404.550 kb on - strand at 404.571 kb on + strand at 404.584 kb on + strand at 404.584 kb on + strand at 404.584 kb on + strand at 404.585 kb on - strand at 404.587 kb on + strand at 404.587 kb on + strand at 404.588 kb on - strand at 404.588 kb on - strand at 404.588 kb on - strand at 404.588 kb on - strand at 404.588 kb on - strand at 404.588 kb on - strand at 404.588 kb on - strand at 404.609 kb on + strand at 404.610 kb on - strand at 404.639 kb on - strand at 404.639 kb on - strand at 404.731 kb on + strand at 404.731 kb on + strand at 404.732 kb on - strand at 404.732 kb on - strand at 404.732 kb on - strand at 404.749 kb on - strand at 404.771 kb on + strand at 404.796 kb on + strand at 404.796 kb on + strand at 404.796 kb on + strand at 404.797 kb on - strand at 404.797 kb on - strand at 404.797 kb on - strand at 404.797 kb on - strand at 404.797 kb on - strand at 404.800 kb on + strand at 404.800 kb on + strand at 404.800 kb on + strand at 404.800 kb on + strand at 404.800 kb on + strand at 404.800 kb on + strand at 404.800 kb on + strand at 404.800 kb on + strand at 404.801 kb on - strand at 404.802 kb on + strand at 404.805 kb on + strand at 404.864 kb on - strand, within IAI46_01880 at 404.947 kb on + strand, within IAI46_01880 at 404.988 kb on + strand, within IAI46_01880 at 404.988 kb on + strand, within IAI46_01880 at 404.989 kb on - strand, within IAI46_01880 at 405.118 kb on + strand, within IAI46_01880 at 405.119 kb on - strand, within IAI46_01880 at 405.119 kb on - strand, within IAI46_01880 at 405.119 kb on - strand, within IAI46_01880 at 405.227 kb on + strand, within IAI46_01880 at 405.253 kb on + strand at 405.253 kb on + strand at 405.274 kb on + strand at 405.275 kb on - strand at 405.353 kb on - strand at 405.395 kb on + strand at 405.395 kb on + strand at 405.395 kb on + strand at 405.427 kb on - strand, within IAI46_01885 at 405.427 kb on - strand, within IAI46_01885 at 405.427 kb on - strand, within IAI46_01885 at 405.427 kb on - strand, within IAI46_01885 at 405.444 kb on + strand, within IAI46_01885 at 405.450 kb on + strand, within IAI46_01885 at 405.453 kb on + strand, within IAI46_01885 at 405.453 kb on + strand, within IAI46_01885 at 405.454 kb on - strand, within IAI46_01885 at 405.496 kb on - strand, within IAI46_01885 at 405.544 kb on + strand, within IAI46_01885 at 405.545 kb on - strand, within IAI46_01885
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic remove 402,193 + IAI46_01865 0.76 +0.2 402,194 - IAI46_01865 0.76 +0.2 402,468 - +0.1 402,523 - IAI46_01870 0.12 +0.3 402,523 - IAI46_01870 0.12 -0.4 402,528 + IAI46_01870 0.13 +0.4 402,554 - IAI46_01870 0.16 +0.2 402,554 - IAI46_01870 0.16 +0.8 402,570 + IAI46_01870 0.19 +1.0 402,572 + IAI46_01870 0.19 +2.1 402,572 + IAI46_01870 0.19 +1.8 402,573 - IAI46_01870 0.19 +0.4 402,683 + IAI46_01870 0.36 +0.5 402,683 + IAI46_01870 0.36 +0.3 402,683 + IAI46_01870 0.36 +0.5 402,683 + IAI46_01870 0.36 +0.3 402,684 - IAI46_01870 0.36 +0.3 402,729 + IAI46_01870 0.43 -0.1 402,729 + IAI46_01870 0.43 +0.8 402,730 - IAI46_01870 0.43 +0.3 402,753 - IAI46_01870 0.46 +0.6 402,785 - IAI46_01870 0.51 +1.4 402,785 - IAI46_01870 0.51 +1.4 402,793 + IAI46_01870 0.52 -0.4 402,815 + IAI46_01870 0.56 +0.7 402,963 + IAI46_01870 0.78 -0.4 402,974 + IAI46_01870 0.80 +0.9 402,975 - IAI46_01870 0.80 +0.5 402,975 - IAI46_01870 0.80 +1.0 402,975 - IAI46_01870 0.80 +0.1 403,034 + IAI46_01870 0.89 +0.3 403,034 + IAI46_01870 0.89 +1.9 403,034 + IAI46_01870 0.89 -0.1 403,035 - IAI46_01870 0.89 +0.4 403,111 - +0.6 403,111 - +0.4 403,208 - -0.6 403,208 - +1.3 403,215 + +0.6 403,215 + -0.6 403,215 + +0.2 403,216 - +0.0 403,219 + -0.5 403,219 + +0.5 403,219 + +0.3 403,219 + -0.1 403,219 + +0.1 403,219 + +0.2 403,219 + -0.0 403,219 + +0.5 403,219 + +0.3 403,219 + -0.7 403,219 + +0.5 403,219 + +1.2 403,220 - -0.7 403,220 - -0.1 403,220 - -0.1 403,224 + -0.1 403,224 + +0.2 403,224 + -0.0 403,225 - -0.5 403,225 - -0.1 403,225 - -0.4 403,225 - +0.0 403,225 - +0.4 403,225 - -0.5 403,256 + -1.2 403,256 + +0.7 403,257 - -0.0 403,257 - +0.5 403,260 - IAI46_01875 0.10 -0.8 403,274 + IAI46_01875 0.11 +0.1 403,275 - IAI46_01875 0.11 +0.1 403,275 - IAI46_01875 0.11 -0.2 403,276 + IAI46_01875 0.11 +0.5 403,276 + IAI46_01875 0.11 +0.7 403,276 + IAI46_01875 0.11 -0.2 403,276 + IAI46_01875 0.11 +2.1 403,276 + IAI46_01875 0.11 +0.6 403,276 + IAI46_01875 0.11 +0.0 403,276 + IAI46_01875 0.11 -0.1 403,276 + IAI46_01875 0.11 +0.1 403,277 - IAI46_01875 0.11 +1.8 403,277 - IAI46_01875 0.11 +0.6 403,277 - IAI46_01875 0.11 +0.1 403,277 - IAI46_01875 0.11 -0.2 403,277 - IAI46_01875 0.11 -0.9 403,277 - IAI46_01875 0.11 +0.5 403,277 - IAI46_01875 0.11 +1.6 403,277 - IAI46_01875 0.11 -0.9 403,277 - IAI46_01875 0.11 +0.2 403,277 - IAI46_01875 0.11 -0.6 403,278 + IAI46_01875 0.11 +0.7 403,278 + IAI46_01875 0.11 -1.1 403,278 + IAI46_01875 0.11 +1.1 403,278 + IAI46_01875 0.11 +0.4 403,279 - IAI46_01875 0.11 +0.6 403,279 - IAI46_01875 0.11 +0.3 403,279 - IAI46_01875 0.11 +0.0 403,279 - IAI46_01875 0.11 -0.0 403,279 - IAI46_01875 0.11 +0.3 403,423 + IAI46_01875 0.21 +0.4 403,423 + IAI46_01875 0.21 -0.4 403,423 + IAI46_01875 0.21 +1.6 403,463 + IAI46_01875 0.24 +0.6 403,489 - IAI46_01875 0.26 +0.2 403,569 - IAI46_01875 0.32 +0.1 403,647 - IAI46_01875 0.37 +0.2 403,789 + IAI46_01875 0.47 +0.6 403,790 - IAI46_01875 0.47 +2.5 403,790 - IAI46_01875 0.47 -0.2 403,790 - IAI46_01875 0.47 +0.3 403,863 - IAI46_01875 0.52 -0.4 403,904 - IAI46_01875 0.55 +1.4 403,946 + IAI46_01875 0.58 +0.1 403,947 - IAI46_01875 0.58 +0.6 403,947 - IAI46_01875 0.58 +0.3 403,952 + IAI46_01875 0.58 +1.3 403,953 - IAI46_01875 0.58 +0.7 403,953 - IAI46_01875 0.58 +0.5 403,953 - IAI46_01875 0.58 -0.0 403,953 - IAI46_01875 0.58 -1.3 403,953 - IAI46_01875 0.58 +0.0 403,967 - IAI46_01875 0.59 -0.1 403,967 - IAI46_01875 0.59 -0.5 403,967 - IAI46_01875 0.59 -0.5 403,982 + IAI46_01875 0.60 +0.6 404,135 + IAI46_01875 0.71 +0.7 404,277 - IAI46_01875 0.81 +0.1 404,311 + IAI46_01875 0.83 +0.4 404,311 + IAI46_01875 0.83 -0.2 404,312 - IAI46_01875 0.83 -0.7 404,312 - IAI46_01875 0.83 -0.3 404,340 + IAI46_01875 0.85 -0.3 404,341 - IAI46_01875 0.85 +0.9 404,364 - IAI46_01875 0.87 +1.0 404,433 + +0.7 404,433 + +0.9 404,434 - +0.0 404,465 - +0.5 404,465 - +0.4 404,473 + +0.4 404,474 - +0.7 404,550 - +0.1 404,550 - -0.6 404,571 + -0.9 404,584 + +0.0 404,584 + -0.7 404,584 + -0.8 404,585 - +0.6 404,587 + +0.4 404,587 + -0.1 404,588 - +0.6 404,588 - -0.6 404,588 - +0.5 404,588 - +0.6 404,588 - +0.8 404,588 - +0.2 404,588 - -0.1 404,609 + -0.2 404,610 - -0.5 404,639 - -1.4 404,639 - -1.6 404,731 + -0.7 404,731 + +0.4 404,732 - +0.4 404,732 - +0.4 404,732 - +0.6 404,749 - -0.3 404,771 + +0.1 404,796 + +0.6 404,796 + +0.5 404,796 + -1.2 404,797 - +0.0 404,797 - -0.9 404,797 - +0.0 404,797 - -1.1 404,797 - -0.1 404,800 + -0.3 404,800 + +0.1 404,800 + -0.0 404,800 + -0.3 404,800 + +0.7 404,800 + +0.3 404,800 + -0.0 404,800 + -2.4 404,801 - -0.4 404,802 + -0.4 404,805 + -0.1 404,864 - IAI46_01880 0.12 +0.5 404,947 + IAI46_01880 0.30 -1.7 404,988 + IAI46_01880 0.38 -0.4 404,988 + IAI46_01880 0.38 +0.9 404,989 - IAI46_01880 0.38 -0.7 405,118 + IAI46_01880 0.65 -1.7 405,119 - IAI46_01880 0.66 -0.2 405,119 - IAI46_01880 0.66 +0.5 405,119 - IAI46_01880 0.66 -0.0 405,227 + IAI46_01880 0.88 -0.1 405,253 + -1.0 405,253 + +0.5 405,274 + +0.0 405,275 - +0.2 405,353 - -0.4 405,395 + +0.6 405,395 + +0.2 405,395 + +0.4 405,427 - IAI46_01885 0.10 +0.8 405,427 - IAI46_01885 0.10 +0.4 405,427 - IAI46_01885 0.10 -0.6 405,427 - IAI46_01885 0.10 -0.3 405,444 + IAI46_01885 0.16 +1.6 405,450 + IAI46_01885 0.18 -1.1 405,453 + IAI46_01885 0.19 -2.7 405,453 + IAI46_01885 0.19 +1.3 405,454 - IAI46_01885 0.19 -0.3 405,496 - IAI46_01885 0.34 +0.4 405,544 + IAI46_01885 0.50 +1.0 405,545 - IAI46_01885 0.50 -0.2
Or see this region's nucleotide sequence