Strain Fitness in Serratia liquefaciens MT49 around IAI46_00950

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00945 and IAI46_00950 overlap by 14 nucleotidesIAI46_00950 and IAI46_00955 overlap by 4 nucleotidesIAI46_00955 and IAI46_00960 are separated by 406 nucleotides IAI46_00945: IAI46_00945 - hypothetical protein, at 210,912 to 212,993 _00945 IAI46_00950: IAI46_00950 - DUF3142 domain-containing protein, at 212,980 to 214,197 _00950 IAI46_00955: IAI46_00955 - aspartate 1-decarboxylase autocleavage activator PanM, at 214,194 to 214,586 _00955 IAI46_00960: IAI46_00960 - branched-chain amino acid ABC transporter substrate-binding protein, at 214,993 to 216,108 _00960 Position (kb) 212 213 214 215Strain fitness (log2 ratio) -1 0 1 2at 212.102 kb on + strand, within IAI46_00945at 212.103 kb on - strand, within IAI46_00945at 212.201 kb on - strand, within IAI46_00945at 212.201 kb on - strand, within IAI46_00945at 212.212 kb on + strand, within IAI46_00945at 212.212 kb on + strand, within IAI46_00945at 212.212 kb on + strand, within IAI46_00945at 212.213 kb on - strand, within IAI46_00945at 212.213 kb on - strand, within IAI46_00945at 212.213 kb on - strand, within IAI46_00945at 212.263 kb on + strand, within IAI46_00945at 212.263 kb on + strand, within IAI46_00945at 212.263 kb on + strand, within IAI46_00945at 212.263 kb on + strand, within IAI46_00945at 212.265 kb on + strand, within IAI46_00945at 212.265 kb on + strand, within IAI46_00945at 212.266 kb on - strand, within IAI46_00945at 212.331 kb on + strand, within IAI46_00945at 212.331 kb on + strand, within IAI46_00945at 212.332 kb on - strand, within IAI46_00945at 212.332 kb on - strand, within IAI46_00945at 212.332 kb on - strand, within IAI46_00945at 212.373 kb on - strand, within IAI46_00945at 212.506 kb on + strand, within IAI46_00945at 212.507 kb on - strand, within IAI46_00945at 212.507 kb on - strand, within IAI46_00945at 212.518 kb on - strand, within IAI46_00945at 212.548 kb on - strand, within IAI46_00945at 212.569 kb on + strand, within IAI46_00945at 212.570 kb on - strand, within IAI46_00945at 212.570 kb on - strand, within IAI46_00945at 212.651 kb on + strand, within IAI46_00945at 212.652 kb on - strand, within IAI46_00945at 212.709 kb on - strand, within IAI46_00945at 212.709 kb on - strand, within IAI46_00945at 212.833 kb on + strandat 212.833 kb on + strandat 212.833 kb on + strandat 212.833 kb on + strandat 212.833 kb on + strandat 212.833 kb on + strandat 212.833 kb on + strandat 212.833 kb on + strandat 212.833 kb on + strandat 212.833 kb on + strandat 212.834 kb on - strandat 212.834 kb on - strandat 212.834 kb on - strandat 212.834 kb on - strandat 212.834 kb on - strandat 212.894 kb on - strandat 212.900 kb on + strandat 212.900 kb on + strandat 212.900 kb on + strandat 212.901 kb on - strandat 212.981 kb on + strandat 213.117 kb on - strand, within IAI46_00950at 213.117 kb on - strand, within IAI46_00950at 213.209 kb on - strand, within IAI46_00950at 213.286 kb on + strand, within IAI46_00950at 213.563 kb on + strand, within IAI46_00950at 213.563 kb on + strand, within IAI46_00950at 213.563 kb on + strand, within IAI46_00950at 213.564 kb on - strand, within IAI46_00950at 213.572 kb on - strand, within IAI46_00950at 213.622 kb on + strand, within IAI46_00950at 213.623 kb on - strand, within IAI46_00950at 213.709 kb on - strand, within IAI46_00950at 213.768 kb on - strand, within IAI46_00950at 213.787 kb on - strand, within IAI46_00950at 213.856 kb on + strand, within IAI46_00950at 214.021 kb on - strand, within IAI46_00950at 214.088 kb on + strandat 214.088 kb on + strandat 214.089 kb on - strandat 214.089 kb on - strandat 214.089 kb on - strandat 214.089 kb on - strandat 214.154 kb on - strandat 214.248 kb on - strand, within IAI46_00955at 214.306 kb on - strand, within IAI46_00955at 214.343 kb on - strand, within IAI46_00955at 214.343 kb on - strand, within IAI46_00955at 214.472 kb on + strand, within IAI46_00955at 214.473 kb on - strand, within IAI46_00955at 214.574 kb on + strandat 214.575 kb on - strandat 214.606 kb on - strandat 214.623 kb on + strandat 214.623 kb on + strandat 214.624 kb on - strandat 214.624 kb on - strandat 214.626 kb on + strandat 214.626 kb on + strandat 214.626 kb on + strandat 214.627 kb on - strandat 214.627 kb on - strandat 214.627 kb on - strandat 214.627 kb on - strandat 214.661 kb on + strandat 214.706 kb on + strandat 214.706 kb on + strandat 214.710 kb on + strandat 214.710 kb on + strandat 214.710 kb on + strandat 214.714 kb on + strandat 214.715 kb on - strandat 214.715 kb on - strandat 214.715 kb on - strandat 214.719 kb on - strandat 214.738 kb on + strandat 214.739 kb on - strandat 214.929 kb on - strandat 214.932 kb on + strandat 214.932 kb on + strandat 214.962 kb on + strandat 214.963 kb on - strandat 215.011 kb on - strandat 215.031 kb on + strandat 215.031 kb on + strandat 215.116 kb on + strand, within IAI46_00960

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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212,102 + IAI46_00945 0.57 +0.1
212,103 - IAI46_00945 0.57 -0.6
212,201 - IAI46_00945 0.62 +0.2
212,201 - IAI46_00945 0.62 -1.1
212,212 + IAI46_00945 0.62 -0.2
212,212 + IAI46_00945 0.62 +0.1
212,212 + IAI46_00945 0.62 +0.4
212,213 - IAI46_00945 0.62 +0.1
212,213 - IAI46_00945 0.62 -1.4
212,213 - IAI46_00945 0.62 +0.7
212,263 + IAI46_00945 0.65 -0.0
212,263 + IAI46_00945 0.65 -0.3
212,263 + IAI46_00945 0.65 +0.7
212,263 + IAI46_00945 0.65 -0.4
212,265 + IAI46_00945 0.65 +0.7
212,265 + IAI46_00945 0.65 +0.7
212,266 - IAI46_00945 0.65 +0.2
212,331 + IAI46_00945 0.68 +0.5
212,331 + IAI46_00945 0.68 +0.7
212,332 - IAI46_00945 0.68 +0.2
212,332 - IAI46_00945 0.68 -0.3
212,332 - IAI46_00945 0.68 +0.8
212,373 - IAI46_00945 0.70 -0.4
212,506 + IAI46_00945 0.77 +0.5
212,507 - IAI46_00945 0.77 +0.4
212,507 - IAI46_00945 0.77 +0.9
212,518 - IAI46_00945 0.77 -0.2
212,548 - IAI46_00945 0.79 -0.3
212,569 + IAI46_00945 0.80 +0.2
212,570 - IAI46_00945 0.80 -1.6
212,570 - IAI46_00945 0.80 -0.7
212,651 + IAI46_00945 0.84 -0.5
212,652 - IAI46_00945 0.84 +0.1
212,709 - IAI46_00945 0.86 +0.2
212,709 - IAI46_00945 0.86 +0.2
212,833 + +0.8
212,833 + +0.4
212,833 + -1.4
212,833 + -0.3
212,833 + +0.4
212,833 + -0.3
212,833 + +1.8
212,833 + -0.9
212,833 + +0.3
212,833 + +0.4
212,834 - +1.0
212,834 - +0.1
212,834 - -0.4
212,834 - +0.7
212,834 - +0.8
212,894 - -0.1
212,900 + +0.5
212,900 + -0.5
212,900 + +0.9
212,901 - +0.9
212,981 + +0.2
213,117 - IAI46_00950 0.11 -0.7
213,117 - IAI46_00950 0.11 +0.1
213,209 - IAI46_00950 0.19 +0.8
213,286 + IAI46_00950 0.25 -0.4
213,563 + IAI46_00950 0.48 +0.0
213,563 + IAI46_00950 0.48 +0.1
213,563 + IAI46_00950 0.48 -0.2
213,564 - IAI46_00950 0.48 +1.2
213,572 - IAI46_00950 0.49 -0.2
213,622 + IAI46_00950 0.53 -0.0
213,623 - IAI46_00950 0.53 +0.4
213,709 - IAI46_00950 0.60 +0.6
213,768 - IAI46_00950 0.65 -0.0
213,787 - IAI46_00950 0.66 +0.1
213,856 + IAI46_00950 0.72 +0.0
214,021 - IAI46_00950 0.85 -0.2
214,088 + -0.5
214,088 + +0.1
214,089 - -0.6
214,089 - +0.2
214,089 - +0.1
214,089 - +0.3
214,154 - -0.6
214,248 - IAI46_00955 0.14 -0.4
214,306 - IAI46_00955 0.28 +0.7
214,343 - IAI46_00955 0.38 +0.1
214,343 - IAI46_00955 0.38 +0.7
214,472 + IAI46_00955 0.71 +0.1
214,473 - IAI46_00955 0.71 +0.2
214,574 + +0.4
214,575 - -0.4
214,606 - -0.3
214,623 + +0.3
214,623 + +0.1
214,624 - +1.4
214,624 - +0.4
214,626 + +0.3
214,626 + +0.0
214,626 + +0.5
214,627 - +0.3
214,627 - +1.1
214,627 - -0.7
214,627 - -0.5
214,661 + -0.4
214,706 + +0.4
214,706 + -0.2
214,710 + +0.1
214,710 + -0.0
214,710 + +0.0
214,714 + -0.5
214,715 - -0.2
214,715 - -1.0
214,715 - +0.0
214,719 - +0.1
214,738 + -1.1
214,739 - +0.0
214,929 - +0.4
214,932 + -1.0
214,932 + +0.5
214,962 + +0.7
214,963 - +0.9
215,011 - -0.1
215,031 + +1.0
215,031 + -0.4
215,116 + IAI46_00960 0.11 +0.1

Or see this region's nucleotide sequence